Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1356 and DVU1357 overlap by 4 nucleotides DVU1357 and DVU1358 are separated by 218 nucleotides DVU1358 and DVU1359 overlap by 4 nucleotides
DVU1356: DVU1356 - HD domain protein (TIGR), at 1,435,251 to 1,436,054
DVU1356
DVU1357: DVU1357 - conserved domain protein (TIGR), at 1,436,051 to 1,436,677
DVU1357
DVU1358: DVU1358 - hydrolase, haloacid dehalogenase-like family (TIGR), at 1,436,896 to 1,437,588
DVU1358
DVU1359: DVU1359 - hypothetical protein (TIGR), at 1,437,585 to 1,438,733
DVU1359
Position (kb) 1436
1437
1438 Strain fitness (log2 ratio) -1
0
1
2 at 1436.036 kb on + strand at 1436.087 kb on + strand at 1436.120 kb on + strand, within DVU1357 at 1436.659 kb on + strand at 1436.683 kb on + strand at 1436.737 kb on - strand at 1436.804 kb on - strand at 1436.810 kb on + strand at 1436.837 kb on - strand at 1436.877 kb on - strand at 1436.968 kb on + strand, within DVU1358 at 1436.976 kb on - strand, within DVU1358 at 1437.052 kb on - strand, within DVU1358 at 1437.136 kb on - strand, within DVU1358 at 1437.197 kb on - strand, within DVU1358 at 1437.205 kb on - strand, within DVU1358 at 1437.253 kb on + strand, within DVU1358 at 1437.308 kb on + strand, within DVU1358 at 1437.321 kb on - strand, within DVU1358 at 1437.323 kb on + strand, within DVU1358 at 1437.370 kb on - strand, within DVU1358 at 1437.401 kb on + strand, within DVU1358 at 1437.409 kb on - strand, within DVU1358 at 1437.437 kb on + strand, within DVU1358 at 1437.499 kb on - strand, within DVU1358 at 1437.500 kb on - strand, within DVU1358 at 1437.512 kb on - strand, within DVU1358 at 1437.540 kb on - strand at 1437.553 kb on - strand at 1437.573 kb on - strand at 1437.606 kb on - strand at 1437.612 kb on - strand at 1437.650 kb on - strand at 1438.060 kb on + strand, within DVU1359 at 1438.097 kb on + strand, within DVU1359 at 1438.099 kb on + strand, within DVU1359 at 1438.113 kb on - strand, within DVU1359 at 1438.117 kb on + strand, within DVU1359 at 1438.129 kb on + strand, within DVU1359 at 1438.158 kb on + strand, within DVU1359 at 1438.158 kb on + strand, within DVU1359 at 1438.163 kb on + strand, within DVU1359 at 1438.261 kb on + strand, within DVU1359 at 1438.298 kb on - strand, within DVU1359 at 1438.458 kb on + strand, within DVU1359 at 1438.520 kb on + strand, within DVU1359 at 1438.550 kb on + strand, within DVU1359 at 1438.550 kb on + strand, within DVU1359 at 1438.558 kb on - strand, within DVU1359 at 1438.578 kb on - strand, within DVU1359 at 1438.578 kb on - strand, within DVU1359
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 1,436,036 + -1.6 1,436,087 + +0.6 1,436,120 + DVU1357 0.11 -0.6 1,436,659 + +0.4 1,436,683 + -1.7 1,436,737 - -1.0 1,436,804 - +0.6 1,436,810 + -0.4 1,436,837 - -0.1 1,436,877 - +0.0 1,436,968 + DVU1358 0.10 -0.5 1,436,976 - DVU1358 0.12 -0.1 1,437,052 - DVU1358 0.23 -0.2 1,437,136 - DVU1358 0.35 +0.4 1,437,197 - DVU1358 0.43 -0.1 1,437,205 - DVU1358 0.45 +0.1 1,437,253 + DVU1358 0.52 +0.2 1,437,308 + DVU1358 0.59 +0.2 1,437,321 - DVU1358 0.61 -0.1 1,437,323 + DVU1358 0.62 -0.1 1,437,370 - DVU1358 0.68 +0.1 1,437,401 + DVU1358 0.73 +0.5 1,437,409 - DVU1358 0.74 -0.1 1,437,437 + DVU1358 0.78 -1.2 1,437,499 - DVU1358 0.87 -1.1 1,437,500 - DVU1358 0.87 +0.1 1,437,512 - DVU1358 0.89 +0.4 1,437,540 - +0.1 1,437,553 - -1.2 1,437,573 - -0.0 1,437,606 - -0.1 1,437,612 - +0.7 1,437,650 - +0.6 1,438,060 + DVU1359 0.41 -0.3 1,438,097 + DVU1359 0.45 -0.4 1,438,099 + DVU1359 0.45 -0.8 1,438,113 - DVU1359 0.46 +0.2 1,438,117 + DVU1359 0.46 -0.1 1,438,129 + DVU1359 0.47 +1.9 1,438,158 + DVU1359 0.50 -0.0 1,438,158 + DVU1359 0.50 +0.5 1,438,163 + DVU1359 0.50 -0.1 1,438,261 + DVU1359 0.59 -1.1 1,438,298 - DVU1359 0.62 -0.8 1,438,458 + DVU1359 0.76 +1.2 1,438,520 + DVU1359 0.81 +0.3 1,438,550 + DVU1359 0.84 +0.5 1,438,550 + DVU1359 0.84 -0.0 1,438,558 - DVU1359 0.85 +0.3 1,438,578 - DVU1359 0.86 -0.7 1,438,578 - DVU1359 0.86 -0.4
Or see this region's nucleotide sequence