Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0585 and DVU0586 are separated by 375 nucleotides DVU0586 and fdnG-1 are separated by 17 nucleotides
DVU0585: DVU0585 - conserved hypothetical protein (TIGR), at 650,376 to 652,769
DVU0585
DVU0586: DVU0586 - hypothetical protein (TIGR), at 653,145 to 653,369
DVU0586
DVU0587: fdnG-1 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 653,387 to 656,404
fdnG-1
Position (kb) 653
654 Strain fitness (log2 ratio) -1
0
1
2 at 652.178 kb on - strand, within DVU0585 at 652.287 kb on - strand, within DVU0585 at 652.311 kb on + strand, within DVU0585 at 652.356 kb on + strand, within DVU0585 at 652.381 kb on + strand, within DVU0585 at 652.399 kb on - strand, within DVU0585 at 652.414 kb on + strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.534 kb on - strand at 652.536 kb on + strand at 652.595 kb on - strand at 652.665 kb on + strand at 652.681 kb on - strand at 652.760 kb on - strand at 652.849 kb on - strand at 652.864 kb on + strand at 652.877 kb on - strand at 652.900 kb on + strand at 652.921 kb on - strand at 652.921 kb on - strand at 652.950 kb on + strand at 652.950 kb on + strand at 652.950 kb on + strand at 653.027 kb on + strand at 653.083 kb on - strand at 653.088 kb on - strand at 653.156 kb on + strand at 653.164 kb on - strand at 653.226 kb on - strand, within DVU0586 at 653.302 kb on - strand, within DVU0586 at 653.331 kb on - strand, within DVU0586 at 653.331 kb on - strand, within DVU0586 at 653.389 kb on - strand at 653.544 kb on + strand at 653.559 kb on - strand at 653.585 kb on + strand at 653.589 kb on - strand at 653.697 kb on + strand, within fdnG-1 at 653.790 kb on - strand, within fdnG-1 at 653.793 kb on + strand, within fdnG-1 at 653.888 kb on + strand, within fdnG-1 at 653.893 kb on + strand, within fdnG-1 at 653.920 kb on - strand, within fdnG-1 at 653.928 kb on + strand, within fdnG-1 at 653.930 kb on - strand, within fdnG-1 at 653.932 kb on + strand, within fdnG-1 at 653.957 kb on + strand, within fdnG-1 at 653.975 kb on - strand, within fdnG-1 at 654.152 kb on + strand, within fdnG-1 at 654.173 kb on - strand, within fdnG-1 at 654.173 kb on - strand, within fdnG-1 at 654.240 kb on - strand, within fdnG-1 at 654.259 kb on + strand, within fdnG-1 at 654.286 kb on + strand, within fdnG-1
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 652,178 - DVU0585 0.75 -0.1 652,287 - DVU0585 0.80 +0.1 652,311 + DVU0585 0.81 -0.9 652,356 + DVU0585 0.83 -0.1 652,381 + DVU0585 0.84 -1.1 652,399 - DVU0585 0.85 -0.3 652,414 + DVU0585 0.85 -0.2 652,454 - DVU0585 0.87 +0.0 652,454 - DVU0585 0.87 -0.2 652,454 - DVU0585 0.87 -0.2 652,534 - +0.3 652,536 + -0.4 652,595 - +0.4 652,665 + -1.4 652,681 - -0.9 652,760 - +0.1 652,849 - -0.0 652,864 + -0.3 652,877 - -0.5 652,900 + -0.1 652,921 - +0.2 652,921 - -0.5 652,950 + +0.2 652,950 + +0.8 652,950 + +2.0 653,027 + +0.2 653,083 - -0.6 653,088 - +0.1 653,156 + -0.4 653,164 - -0.9 653,226 - DVU0586 0.36 +0.1 653,302 - DVU0586 0.70 -0.9 653,331 - DVU0586 0.83 -0.9 653,331 - DVU0586 0.83 -0.2 653,389 - -1.0 653,544 + +0.3 653,559 - -0.4 653,585 + +0.8 653,589 - +0.4 653,697 + fdnG-1 DVU0587 0.10 -0.6 653,790 - fdnG-1 DVU0587 0.13 -1.1 653,793 + fdnG-1 DVU0587 0.13 -0.8 653,888 + fdnG-1 DVU0587 0.17 -1.1 653,893 + fdnG-1 DVU0587 0.17 +1.3 653,920 - fdnG-1 DVU0587 0.18 +0.2 653,928 + fdnG-1 DVU0587 0.18 -1.7 653,930 - fdnG-1 DVU0587 0.18 +0.2 653,932 + fdnG-1 DVU0587 0.18 +0.2 653,957 + fdnG-1 DVU0587 0.19 +0.6 653,975 - fdnG-1 DVU0587 0.19 +1.1 654,152 + fdnG-1 DVU0587 0.25 +0.9 654,173 - fdnG-1 DVU0587 0.26 -0.5 654,173 - fdnG-1 DVU0587 0.26 -1.0 654,240 - fdnG-1 DVU0587 0.28 -0.3 654,259 + fdnG-1 DVU0587 0.29 -0.5 654,286 + fdnG-1 DVU0587 0.30 +0.3
Or see this region's nucleotide sequence