Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dctM and DVU0010 overlap by 4 nucleotides DVU0010 and DVU0011 are separated by 61 nucleotides DVU0011 and DVU0012 are separated by 487 nucleotides
DVU0009: dctM - DedA family protein (TIGR), at 11,681 to 12,961
dctM
DVU0010: DVU0010 - TRAP transporter, DctQ family (TIGR), at 12,958 to 13,524
DVU0010
DVU0011: DVU0011 - TRAP dicarboxylate family transporter (TIGR), at 13,586 to 14,611
DVU0011
DVU0012: DVU0012 - hypothetical protein (TIGR), at 15,099 to 16,301
DVU0012
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.641 kb on - strand, within dctM at 12.641 kb on - strand, within dctM at 12.665 kb on + strand, within dctM at 12.670 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.753 kb on + strand, within dctM at 12.771 kb on + strand, within dctM at 12.811 kb on - strand, within dctM at 12.965 kb on - strand at 12.965 kb on - strand at 12.986 kb on - strand at 13.000 kb on - strand at 13.055 kb on + strand, within DVU0010 at 13.081 kb on - strand, within DVU0010 at 13.117 kb on - strand, within DVU0010 at 13.126 kb on - strand, within DVU0010 at 13.162 kb on - strand, within DVU0010 at 13.188 kb on - strand, within DVU0010 at 13.194 kb on + strand, within DVU0010 at 13.305 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.456 kb on - strand, within DVU0010 at 13.500 kb on + strand at 13.587 kb on + strand at 13.595 kb on - strand at 13.596 kb on - strand at 13.649 kb on - strand at 13.664 kb on - strand at 13.728 kb on + strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.788 kb on - strand, within DVU0011 at 13.808 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.854 kb on + strand, within DVU0011 at 13.863 kb on + strand, within DVU0011 at 13.873 kb on + strand, within DVU0011 at 13.873 kb on - strand, within DVU0011 at 13.878 kb on + strand, within DVU0011 at 13.881 kb on - strand, within DVU0011 at 13.883 kb on + strand, within DVU0011 at 13.936 kb on - strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.005 kb on + strand, within DVU0011 at 14.017 kb on + strand, within DVU0011 at 14.048 kb on + strand, within DVU0011 at 14.161 kb on - strand, within DVU0011 at 14.168 kb on - strand, within DVU0011 at 14.186 kb on + strand, within DVU0011 at 14.190 kb on - strand, within DVU0011 at 14.252 kb on - strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.354 kb on + strand, within DVU0011 at 14.379 kb on + strand, within DVU0011 at 14.389 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.402 kb on - strand, within DVU0011 at 14.407 kb on + strand, within DVU0011 at 14.458 kb on - strand, within DVU0011 at 14.490 kb on + strand, within DVU0011 at 14.495 kb on + strand, within DVU0011 at 14.498 kb on - strand, within DVU0011 at 14.540 kb on - strand at 14.563 kb on + strand at 14.568 kb on + strand at 14.571 kb on - strand at 14.571 kb on - strand at 14.576 kb on - strand at 14.578 kb on + strand at 14.578 kb on + strand at 14.588 kb on + strand at 14.588 kb on + strand at 14.591 kb on - strand at 14.597 kb on - strand at 14.597 kb on - strand at 14.611 kb on + strand at 14.625 kb on - strand at 14.630 kb on - strand at 14.630 kb on - strand at 14.646 kb on + strand at 14.666 kb on - strand at 14.781 kb on + strand at 14.783 kb on + strand at 14.783 kb on + strand at 14.791 kb on - strand at 14.827 kb on + strand at 14.831 kb on - strand at 14.844 kb on + strand at 14.858 kb on + strand at 14.900 kb on + strand at 14.900 kb on + strand at 14.900 kb on + strand at 14.908 kb on - strand at 14.914 kb on + strand at 14.961 kb on - strand at 14.980 kb on + strand at 15.035 kb on + strand at 15.043 kb on - strand at 15.050 kb on + strand at 15.058 kb on - strand at 15.115 kb on - strand at 15.117 kb on + strand at 15.117 kb on + strand at 15.287 kb on + strand, within DVU0012 at 15.502 kb on - strand, within DVU0012 at 15.522 kb on - strand, within DVU0012 at 15.557 kb on - strand, within DVU0012
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 12,641 - dctM DVU0009 0.75 -0.1 12,641 - dctM DVU0009 0.75 -0.1 12,665 + dctM DVU0009 0.77 -0.7 12,670 - dctM DVU0009 0.77 -0.0 12,698 - dctM DVU0009 0.79 +0.3 12,698 - dctM DVU0009 0.79 +0.5 12,753 + dctM DVU0009 0.84 +0.8 12,771 + dctM DVU0009 0.85 -0.1 12,811 - dctM DVU0009 0.88 -0.1 12,965 - +0.4 12,965 - +0.4 12,986 - -0.3 13,000 - -0.5 13,055 + DVU0010 0.17 -0.2 13,081 - DVU0010 0.22 +0.1 13,117 - DVU0010 0.28 -0.1 13,126 - DVU0010 0.30 -2.5 13,162 - DVU0010 0.36 +0.1 13,188 - DVU0010 0.41 -0.2 13,194 + DVU0010 0.42 -1.3 13,305 + DVU0010 0.61 -0.1 13,448 + DVU0010 0.86 -1.0 13,448 + DVU0010 0.86 -0.9 13,448 + DVU0010 0.86 -0.5 13,456 - DVU0010 0.88 +0.9 13,500 + -1.1 13,587 + -0.0 13,595 - -0.3 13,596 - -0.8 13,649 - +0.1 13,664 - +0.6 13,728 + DVU0011 0.14 +0.1 13,746 - DVU0011 0.16 -1.5 13,746 - DVU0011 0.16 +0.4 13,788 - DVU0011 0.20 +0.6 13,808 + DVU0011 0.22 +0.1 13,839 + DVU0011 0.25 +1.3 13,839 + DVU0011 0.25 +0.8 13,847 - DVU0011 0.25 +0.1 13,847 - DVU0011 0.25 +0.2 13,854 + DVU0011 0.26 -0.2 13,863 + DVU0011 0.27 -0.3 13,873 + DVU0011 0.28 +0.1 13,873 - DVU0011 0.28 +0.1 13,878 + DVU0011 0.28 -1.1 13,881 - DVU0011 0.29 -0.2 13,883 + DVU0011 0.29 -0.2 13,936 - DVU0011 0.34 +0.0 14,003 + DVU0011 0.41 +1.0 14,003 + DVU0011 0.41 -0.5 14,005 + DVU0011 0.41 -1.1 14,017 + DVU0011 0.42 +0.4 14,048 + DVU0011 0.45 -0.1 14,161 - DVU0011 0.56 +1.1 14,168 - DVU0011 0.57 -0.0 14,186 + DVU0011 0.58 -0.7 14,190 - DVU0011 0.59 +0.0 14,252 - DVU0011 0.65 +0.0 14,328 + DVU0011 0.72 +0.2 14,328 + DVU0011 0.72 +1.2 14,328 + DVU0011 0.72 -0.3 14,328 + DVU0011 0.72 +1.8 14,336 - DVU0011 0.73 -2.0 14,336 - DVU0011 0.73 +0.0 14,336 - DVU0011 0.73 +1.8 14,336 - DVU0011 0.73 +0.4 14,336 - DVU0011 0.73 +1.8 14,354 + DVU0011 0.75 -0.4 14,379 + DVU0011 0.77 +0.1 14,389 + DVU0011 0.78 +0.2 14,394 + DVU0011 0.79 +0.5 14,394 + DVU0011 0.79 +0.7 14,402 - DVU0011 0.80 +0.1 14,407 + DVU0011 0.80 -2.0 14,458 - DVU0011 0.85 +0.3 14,490 + DVU0011 0.88 +0.3 14,495 + DVU0011 0.89 +0.2 14,498 - DVU0011 0.89 -0.4 14,540 - -0.1 14,563 + +0.1 14,568 + -0.1 14,571 - -0.1 14,571 - -0.6 14,576 - -0.4 14,578 + -0.7 14,578 + +0.4 14,588 + -0.3 14,588 + -0.3 14,591 - -0.1 14,597 - +0.3 14,597 - -1.8 14,611 + +0.6 14,625 - -0.7 14,630 - -0.0 14,630 - +0.5 14,646 + -0.0 14,666 - +0.2 14,781 + -0.1 14,783 + +0.3 14,783 + +0.8 14,791 - -0.3 14,827 + +0.4 14,831 - -0.2 14,844 + -1.2 14,858 + +0.9 14,900 + +0.3 14,900 + -0.7 14,900 + -0.1 14,908 - -0.4 14,914 + +0.8 14,961 - -0.2 14,980 + -0.3 15,035 + +0.3 15,043 - +0.1 15,050 + -0.7 15,058 - -0.4 15,115 - +1.5 15,117 + +0.4 15,117 + -0.4 15,287 + DVU0012 0.16 -0.8 15,502 - DVU0012 0.33 -0.5 15,522 - DVU0012 0.35 +0.2 15,557 - DVU0012 0.38 +0.3
Or see this region's nucleotide sequence