Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0896 and DVU0897 are separated by 1 nucleotides DVU0897 and DVU0898 are separated by 84 nucleotides DVU0898 and DVU0899 overlap by 4 nucleotides
DVU0896: DVU0896 - lipoprotein, NLP/P60 family (TIGR), at 988,431 to 989,825
DVU0896
DVU0897: DVU0897 - RNA modification enzyme, MiaB-family (TIGR), at 989,827 to 991,203
DVU0897
DVU0898: DVU0898 - conserved hypothetical protein (TIGR), at 991,288 to 992,169
DVU0898
DVU0899: DVU0899 - conserved hypothetical protein (TIGR), at 992,166 to 992,426
DVU0899
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.848 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.952 kb on + strand, within DVU0896 at 988.953 kb on + strand, within DVU0896 at 988.959 kb on + strand, within DVU0896 at 988.960 kb on - strand, within DVU0896 at 988.961 kb on - strand, within DVU0896 at 989.021 kb on - strand, within DVU0896 at 989.032 kb on + strand, within DVU0896 at 989.040 kb on - strand, within DVU0896 at 989.142 kb on - strand, within DVU0896 at 989.153 kb on + strand, within DVU0896 at 989.173 kb on - strand, within DVU0896 at 989.212 kb on - strand, within DVU0896 at 989.253 kb on + strand, within DVU0896 at 989.256 kb on - strand, within DVU0896 at 989.261 kb on - strand, within DVU0896 at 989.274 kb on + strand, within DVU0896 at 989.295 kb on - strand, within DVU0896 at 989.390 kb on + strand, within DVU0896 at 989.390 kb on + strand, within DVU0896 at 989.431 kb on + strand, within DVU0896 at 989.431 kb on + strand, within DVU0896 at 989.439 kb on - strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.503 kb on - strand, within DVU0896 at 989.617 kb on + strand, within DVU0896 at 989.633 kb on - strand, within DVU0896 at 989.725 kb on + strand at 989.743 kb on - strand at 989.785 kb on - strand at 989.785 kb on - strand at 989.991 kb on - strand, within DVU0897 at 990.103 kb on + strand, within DVU0897 at 990.146 kb on - strand, within DVU0897 at 990.157 kb on + strand, within DVU0897 at 990.247 kb on - strand, within DVU0897 at 990.270 kb on + strand, within DVU0897 at 990.339 kb on - strand, within DVU0897 at 990.398 kb on + strand, within DVU0897 at 990.564 kb on - strand, within DVU0897 at 990.626 kb on + strand, within DVU0897 at 990.634 kb on - strand, within DVU0897 at 990.692 kb on + strand, within DVU0897 at 990.729 kb on - strand, within DVU0897 at 990.917 kb on - strand, within DVU0897 at 990.917 kb on - strand, within DVU0897 at 991.069 kb on - strand at 991.089 kb on + strand at 991.134 kb on + strand at 991.135 kb on - strand at 991.218 kb on + strand at 991.279 kb on - strand at 991.291 kb on - strand at 991.349 kb on + strand at 991.355 kb on - strand at 991.372 kb on - strand at 991.395 kb on - strand, within DVU0898 at 991.418 kb on + strand, within DVU0898 at 991.483 kb on - strand, within DVU0898 at 991.504 kb on - strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.546 kb on + strand, within DVU0898 at 991.685 kb on + strand, within DVU0898 at 991.730 kb on + strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.793 kb on - strand, within DVU0898 at 991.821 kb on + strand, within DVU0898 at 991.876 kb on + strand, within DVU0898 at 991.914 kb on + strand, within DVU0898 at 991.937 kb on + strand, within DVU0898 at 991.998 kb on + strand, within DVU0898 at 992.090 kb on - strand at 992.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 988,847 + DVU0896 0.30 +0.1 988,847 + DVU0896 0.30 -0.3 988,847 + DVU0896 0.30 +0.5 988,848 - DVU0896 0.30 +0.6 988,855 - DVU0896 0.30 +0.5 988,855 - DVU0896 0.30 -0.8 988,932 + DVU0896 0.36 +1.2 988,932 + DVU0896 0.36 +0.1 988,952 + DVU0896 0.37 +0.1 988,953 + DVU0896 0.37 -0.1 988,959 + DVU0896 0.38 +0.3 988,960 - DVU0896 0.38 -0.2 988,961 - DVU0896 0.38 -1.2 989,021 - DVU0896 0.42 -0.3 989,032 + DVU0896 0.43 +0.3 989,040 - DVU0896 0.44 +0.6 989,142 - DVU0896 0.51 +0.1 989,153 + DVU0896 0.52 -0.4 989,173 - DVU0896 0.53 +0.3 989,212 - DVU0896 0.56 +0.2 989,253 + DVU0896 0.59 +0.1 989,256 - DVU0896 0.59 +0.2 989,261 - DVU0896 0.59 -0.6 989,274 + DVU0896 0.60 +0.1 989,295 - DVU0896 0.62 -0.7 989,390 + DVU0896 0.69 -0.3 989,390 + DVU0896 0.69 +1.3 989,431 + DVU0896 0.72 +0.3 989,431 + DVU0896 0.72 -0.2 989,439 - DVU0896 0.72 -0.7 989,495 + DVU0896 0.76 +0.5 989,495 + DVU0896 0.76 -0.2 989,495 + DVU0896 0.76 -0.4 989,503 - DVU0896 0.77 +0.2 989,617 + DVU0896 0.85 -0.5 989,633 - DVU0896 0.86 +0.4 989,725 + +0.0 989,743 - -2.3 989,785 - -0.4 989,785 - -0.7 989,991 - DVU0897 0.12 -0.8 990,103 + DVU0897 0.20 +0.1 990,146 - DVU0897 0.23 +1.3 990,157 + DVU0897 0.24 +0.9 990,247 - DVU0897 0.31 +0.5 990,270 + DVU0897 0.32 +0.2 990,339 - DVU0897 0.37 +0.9 990,398 + DVU0897 0.41 +0.7 990,564 - DVU0897 0.54 +0.8 990,626 + DVU0897 0.58 +1.8 990,634 - DVU0897 0.59 +0.5 990,692 + DVU0897 0.63 -1.6 990,729 - DVU0897 0.66 +0.7 990,917 - DVU0897 0.79 +0.0 990,917 - DVU0897 0.79 +0.6 991,069 - +0.1 991,089 + +0.1 991,134 + +0.4 991,135 - +1.0 991,218 + -0.0 991,279 - -2.3 991,291 - -0.2 991,349 + +0.4 991,355 - +0.7 991,372 - -0.3 991,395 - DVU0898 0.12 +0.4 991,418 + DVU0898 0.15 -2.0 991,483 - DVU0898 0.22 +0.1 991,504 - DVU0898 0.24 +0.6 991,507 + DVU0898 0.25 -0.3 991,507 + DVU0898 0.25 +0.3 991,546 + DVU0898 0.29 +1.2 991,685 + DVU0898 0.45 -0.1 991,730 + DVU0898 0.50 -0.4 991,738 - DVU0898 0.51 +1.6 991,738 - DVU0898 0.51 -0.1 991,793 - DVU0898 0.57 -0.5 991,821 + DVU0898 0.60 +0.0 991,876 + DVU0898 0.67 +0.8 991,914 + DVU0898 0.71 -0.5 991,937 + DVU0898 0.74 -0.0 991,998 + DVU0898 0.80 -0.5 992,090 - -0.7 992,139 - +0.6
Or see this region's nucleotide sequence