Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0411 and DVU0412 are separated by 16 nucleotides DVU0412 and trk1 are separated by 57 nucleotides
DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671
DVU0411
DVU0412: DVU0412 - potassium uptake protein TrkA, putative (TIGR), at 461,688 to 462,353
DVU0412
DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748
trk1
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1 at 460.701 kb on + strand, within DVU0411 at 460.709 kb on - strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.769 kb on + strand, within DVU0411 at 460.876 kb on - strand, within DVU0411 at 460.914 kb on + strand, within DVU0411 at 460.922 kb on - strand, within DVU0411 at 460.924 kb on - strand, within DVU0411 at 460.984 kb on + strand, within DVU0411 at 461.049 kb on - strand, within DVU0411 at 461.132 kb on + strand, within DVU0411 at 461.140 kb on - strand, within DVU0411 at 461.165 kb on + strand, within DVU0411 at 461.361 kb on - strand, within DVU0411 at 461.480 kb on - strand, within DVU0411 at 461.504 kb on + strand at 461.512 kb on - strand at 461.521 kb on + strand at 461.539 kb on - strand at 461.634 kb on + strand at 461.816 kb on + strand, within DVU0412 at 461.824 kb on - strand, within DVU0412 at 461.903 kb on + strand, within DVU0412 at 461.965 kb on - strand, within DVU0412 at 462.012 kb on - strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.181 kb on - strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.274 kb on + strand, within DVU0412 at 462.329 kb on - strand at 462.360 kb on + strand at 462.368 kb on - strand at 462.591 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.653 kb on - strand, within trk1 at 462.747 kb on + strand, within trk1 at 462.755 kb on - strand, within trk1 at 462.784 kb on + strand, within trk1 at 462.784 kb on + strand, within trk1 at 462.792 kb on - strand, within trk1 at 462.792 kb on - strand, within trk1 at 462.792 kb on - strand, within trk1 at 462.818 kb on + strand, within trk1 at 462.897 kb on - strand, within trk1 at 462.961 kb on + strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.978 kb on - strand, within trk1 at 462.996 kb on + strand, within trk1 at 463.029 kb on + strand, within trk1 at 463.072 kb on - strand, within trk1 at 463.087 kb on - strand, within trk1 at 463.145 kb on + strand, within trk1 at 463.189 kb on - strand, within trk1 at 463.302 kb on + strand, within trk1 at 463.315 kb on + strand, within trk1 at 463.344 kb on - strand, within trk1
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 460,701 + DVU0411 0.42 -0.5 460,709 - DVU0411 0.42 -0.4 460,764 + DVU0411 0.46 +0.4 460,764 + DVU0411 0.46 -0.6 460,769 + DVU0411 0.46 +0.5 460,876 - DVU0411 0.52 -1.8 460,914 + DVU0411 0.55 -0.2 460,922 - DVU0411 0.55 +0.5 460,924 - DVU0411 0.55 +0.7 460,984 + DVU0411 0.59 -0.6 461,049 - DVU0411 0.63 -2.1 461,132 + DVU0411 0.68 +0.0 461,140 - DVU0411 0.68 -1.0 461,165 + DVU0411 0.70 -0.2 461,361 - DVU0411 0.81 -0.4 461,480 - DVU0411 0.89 +0.1 461,504 + +0.3 461,512 - -0.3 461,521 + +0.1 461,539 - +0.0 461,634 + -0.6 461,816 + DVU0412 0.19 -0.1 461,824 - DVU0412 0.20 -0.6 461,903 + DVU0412 0.32 +0.2 461,965 - DVU0412 0.42 +0.1 462,012 - DVU0412 0.49 -0.4 462,046 + DVU0412 0.54 -0.0 462,046 + DVU0412 0.54 -0.5 462,054 - DVU0412 0.55 -1.4 462,054 - DVU0412 0.55 -0.9 462,054 - DVU0412 0.55 -0.6 462,054 - DVU0412 0.55 -1.5 462,181 - DVU0412 0.74 -0.0 462,239 + DVU0412 0.83 -0.3 462,239 + DVU0412 0.83 +0.4 462,274 + DVU0412 0.88 -1.2 462,329 - -0.1 462,360 + -0.3 462,368 - +0.1 462,591 - trk1 DVU0413 0.13 -0.4 462,599 - trk1 DVU0413 0.14 -0.2 462,599 - trk1 DVU0413 0.14 +1.0 462,599 - trk1 DVU0413 0.14 -0.6 462,609 - trk1 DVU0413 0.15 +1.6 462,609 - trk1 DVU0413 0.15 +1.0 462,653 - trk1 DVU0413 0.18 -1.0 462,747 + trk1 DVU0413 0.25 +0.5 462,755 - trk1 DVU0413 0.26 -1.7 462,784 + trk1 DVU0413 0.28 -0.2 462,784 + trk1 DVU0413 0.28 -1.6 462,792 - trk1 DVU0413 0.28 -1.3 462,792 - trk1 DVU0413 0.28 +1.1 462,792 - trk1 DVU0413 0.28 -0.6 462,818 + trk1 DVU0413 0.30 -0.0 462,897 - trk1 DVU0413 0.36 -0.9 462,961 + trk1 DVU0413 0.41 +0.1 462,969 - trk1 DVU0413 0.42 +0.2 462,969 - trk1 DVU0413 0.42 -0.0 462,969 - trk1 DVU0413 0.42 +0.6 462,978 - trk1 DVU0413 0.42 -1.5 462,996 + trk1 DVU0413 0.44 +0.3 463,029 + trk1 DVU0413 0.46 -1.0 463,072 - trk1 DVU0413 0.49 +0.4 463,087 - trk1 DVU0413 0.51 -1.8 463,145 + trk1 DVU0413 0.55 -0.7 463,189 - trk1 DVU0413 0.58 -0.4 463,302 + trk1 DVU0413 0.67 -1.4 463,315 + trk1 DVU0413 0.68 -0.9 463,344 - trk1 DVU0413 0.70 +0.5
Or see this region's nucleotide sequence