Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3159

Experiment: MoYLS4 with Cefoxitin 5ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with Cefoxitin 5ug/mL
3,315,177	+				+2.3
3,315,177	+				+0.6
3,315,185	-				-0.0
3,315,211	+				-0.1
3,315,281	+	vacJhomolog	DVU3158	0.13	-0.3
3,315,284	-	vacJhomolog	DVU3158	0.14	-0.3
3,315,337	-	vacJhomolog	DVU3158	0.20	+0.0
3,315,346	-	vacJhomolog	DVU3158	0.21	+0.1
3,315,393	-	vacJhomolog	DVU3158	0.26	-0.1
3,315,450	+	vacJhomolog	DVU3158	0.32	-0.1
3,315,458	-	vacJhomolog	DVU3158	0.33	-0.9
3,315,458	-	vacJhomolog	DVU3158	0.33	+0.3
3,315,483	+	vacJhomolog	DVU3158	0.36	-1.2
3,315,575	-	vacJhomolog	DVU3158	0.47	-0.7
3,315,662	+	vacJhomolog	DVU3158	0.56	-0.8
3,315,753	-	vacJhomolog	DVU3158	0.67	-1.0
3,315,766	-	vacJhomolog	DVU3158	0.68	+1.8
3,315,768	+	vacJhomolog	DVU3158	0.68	-0.0
3,315,788	-	vacJhomolog	DVU3158	0.70	+0.3
3,315,802	+	vacJhomolog	DVU3158	0.72	-0.4
3,315,860	+	vacJhomolog	DVU3158	0.79	-1.4
3,315,957	+	vacJhomolog	DVU3158	0.90	-1.4
3,316,078	-				+0.5
3,316,088	-				+0.2
3,316,230	+				-1.5
3,316,250	+				-1.3
3,316,266	-				-0.9
3,316,268	+				-0.9
3,316,268	+				-0.8
3,316,276	+	gpsA	DVU3159	0.11	-0.7
3,316,284	-	gpsA	DVU3159	0.11	-0.5
3,316,284	-	gpsA	DVU3159	0.11	-0.3
3,316,293	+	gpsA	DVU3159	0.12	-1.2
3,316,322	-	gpsA	DVU3159	0.15	+0.9
3,316,329	-	gpsA	DVU3159	0.16	-1.6
3,316,343	-	gpsA	DVU3159	0.17	-0.5
3,316,412	+	gpsA	DVU3159	0.24	-0.7
3,316,417	+	gpsA	DVU3159	0.25	-0.5
3,316,422	+	gpsA	DVU3159	0.25	+2.5
3,316,422	-	gpsA	DVU3159	0.25	-0.8
3,316,494	-	gpsA	DVU3159	0.33	+0.2
3,316,511	-	gpsA	DVU3159	0.34	-0.8
3,316,563	+	gpsA	DVU3159	0.40	-0.9
3,316,568	+	gpsA	DVU3159	0.40	-2.0
3,316,630	+	gpsA	DVU3159	0.46	-0.5
3,316,704	+	gpsA	DVU3159	0.54	+0.9
3,316,705	-	gpsA	DVU3159	0.54	-0.4
3,316,707	-	gpsA	DVU3159	0.54	-0.1
3,316,712	+	gpsA	DVU3159	0.55	-0.9
3,316,712	-	gpsA	DVU3159	0.55	-0.4
3,316,712	-	gpsA	DVU3159	0.55	-1.2
3,316,771	+	gpsA	DVU3159	0.61	-0.0
3,316,860	+	gpsA	DVU3159	0.69	-0.6
3,316,868	-	gpsA	DVU3159	0.70	+1.1
3,316,873	-	gpsA	DVU3159	0.71	-0.5
3,316,876	+	gpsA	DVU3159	0.71	-0.2
3,316,889	+	gpsA	DVU3159	0.72	-0.5
3,316,889	+	gpsA	DVU3159	0.72	-2.5
3,316,897	-	gpsA	DVU3159	0.73	-0.5
3,316,904	+	gpsA	DVU3159	0.74	+0.8
3,316,907	-	gpsA	DVU3159	0.74	+0.7
3,316,907	-	gpsA	DVU3159	0.74	-0.5
3,316,907	-	gpsA	DVU3159	0.74	-0.7
3,316,909	+	gpsA	DVU3159	0.74	+0.4
3,316,909	+	gpsA	DVU3159	0.74	-0.5
3,316,909	+	gpsA	DVU3159	0.74	-0.6
3,317,001	-	gpsA	DVU3159	0.84	-0.3
3,317,001	-	gpsA	DVU3159	0.84	+0.6
3,317,050	+	gpsA	DVU3159	0.89	-1.3
3,317,050	+	gpsA	DVU3159	0.89	-0.2
3,317,050	+	gpsA	DVU3159	0.89	-0.6
3,317,058	-	gpsA	DVU3159	0.89	+0.0
3,317,058	-	gpsA	DVU3159	0.89	-1.1
3,317,060	+	gpsA	DVU3159	0.90	-0.1
3,317,060	+	gpsA	DVU3159	0.90	-1.0
3,317,132	+				-1.8
3,317,142	+				-2.0
3,317,142	+				-0.8
3,317,150	-				-0.8
3,317,150	-				-1.7
3,317,155	-				-0.7
3,317,170	+				-1.1
3,317,176	-				-0.2
3,317,193	+				+0.3
3,317,226	-				+1.2
3,317,226	-				-0.4
3,317,228	+				+0.3
3,317,233	+				-0.9
3,317,234	+				-1.0
3,317,386	+				+1.5
3,317,410	+				-0.4
3,317,420	+				+0.1
3,317,458	+				-0.1
3,317,579	+		DVU3161	0.12	-0.2
3,317,671	-		DVU3161	0.21	-0.1
3,317,709	-		DVU3161	0.24	-1.3
3,317,713	+		DVU3161	0.25	-0.6
3,317,743	+		DVU3161	0.28	+1.8
3,317,998	+		DVU3161	0.52	+0.6
3,318,002	+		DVU3161	0.52	-0.5
3,318,003	+		DVU3161	0.52	+0.3
3,318,006	-		DVU3161	0.53	+1.2
3,318,017	-		DVU3161	0.54	-0.1
3,318,033	-		DVU3161	0.55	-0.1
3,318,033	-		DVU3161	0.55	-2.5
3,318,037	-		DVU3161	0.56	-0.2
3,318,038	-		DVU3161	0.56	-0.7
3,318,090	+		DVU3161	0.61	-1.0
3,318,090	+		DVU3161	0.61	-0.1
3,318,097	+		DVU3161	0.61	+0.2
3,318,121	-		DVU3161	0.64	-0.1