Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2454 and DVU2455 are separated by 156 nucleotides DVU2455 and DV_r01 are separated by 264 nucleotides DV_r01 and rrf are separated by 41 nucleotides rrf and rrl are separated by 107 nucleotides
DVU2454: DVU2454 - hypothetical protein (TIGR), at 2,557,471 to 2,557,740
DVU2454
DVU2455: DVU2455 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 2,557,897 to 2,558,847
DVU2455
DV_r01: DV_r01 - 5S ribosomal RNA (RefSeq), at 2,559,112 to 2,559,228
_r01
Dv5SC: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 2,559,270 to 2,559,386
rrf
Dv23SC: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 2,559,494 to 2,562,414
rrl
Position (kb)
2557
2558
2559 Strain fitness (log2 ratio)
-1
0
1 at 2557.274 kb on - strand at 2557.308 kb on + strand at 2557.353 kb on + strand at 2557.361 kb on - strand at 2557.361 kb on - strand at 2557.371 kb on - strand at 2557.539 kb on - strand, within DVU2454 at 2557.714 kb on + strand at 2557.791 kb on + strand at 2557.791 kb on + strand at 2557.794 kb on - strand at 2557.867 kb on - strand at 2557.875 kb on + strand at 2557.954 kb on - strand at 2557.954 kb on - strand at 2557.954 kb on - strand at 2558.029 kb on + strand, within DVU2455 at 2558.054 kb on + strand, within DVU2455 at 2558.362 kb on - strand, within DVU2455 at 2558.524 kb on + strand, within DVU2455 at 2558.532 kb on - strand, within DVU2455 at 2558.609 kb on - strand, within DVU2455 at 2558.793 kb on - strand at 2558.994 kb on - strand at 2559.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 2,557,274 - +0.3 2,557,308 + -0.6 2,557,353 + +0.2 2,557,361 - -0.3 2,557,361 - -0.8 2,557,371 - +0.2 2,557,539 - DVU2454 0.25 -1.6 2,557,714 + -1.7 2,557,791 + -1.1 2,557,791 + +0.2 2,557,794 - +1.0 2,557,867 - +0.0 2,557,875 + -0.1 2,557,954 - -0.4 2,557,954 - -0.8 2,557,954 - -0.1 2,558,029 + DVU2455 0.14 -0.5 2,558,054 + DVU2455 0.17 +0.1 2,558,362 - DVU2455 0.49 -0.3 2,558,524 + DVU2455 0.66 -0.5 2,558,532 - DVU2455 0.67 -0.1 2,558,609 - DVU2455 0.75 -1.1 2,558,793 - -0.1 2,558,994 - +0.3 2,559,016 + -1.0
Or see this region's nucleotide sequence