Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2455

Experiment: MoYLS4 with Cefoxitin 5ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2454 and DVU2455 are separated by 156 nucleotidesDVU2455 and DV_r01 are separated by 264 nucleotidesDV_r01 and rrf are separated by 41 nucleotidesrrf and rrl are separated by 107 nucleotides DVU2454: DVU2454 - hypothetical protein (TIGR), at 2,557,471 to 2,557,740 DVU2454 DVU2455: DVU2455 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 2,557,897 to 2,558,847 DVU2455 DV_r01: DV_r01 - 5S ribosomal RNA (RefSeq), at 2,559,112 to 2,559,228 _r01 Dv5SC: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 2,559,270 to 2,559,386 rrf Dv23SC: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 2,559,494 to 2,562,414 rrl Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -1 0 1at 2557.274 kb on - strandat 2557.308 kb on + strandat 2557.353 kb on + strandat 2557.361 kb on - strandat 2557.361 kb on - strandat 2557.371 kb on - strandat 2557.539 kb on - strand, within DVU2454at 2557.714 kb on + strandat 2557.791 kb on + strandat 2557.791 kb on + strandat 2557.794 kb on - strandat 2557.867 kb on - strandat 2557.875 kb on + strandat 2557.954 kb on - strandat 2557.954 kb on - strandat 2557.954 kb on - strandat 2558.029 kb on + strand, within DVU2455at 2558.054 kb on + strand, within DVU2455at 2558.362 kb on - strand, within DVU2455at 2558.524 kb on + strand, within DVU2455at 2558.532 kb on - strand, within DVU2455at 2558.609 kb on - strand, within DVU2455at 2558.793 kb on - strandat 2558.994 kb on - strandat 2559.016 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL
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2,557,274 - +0.3
2,557,308 + -0.6
2,557,353 + +0.2
2,557,361 - -0.3
2,557,361 - -0.8
2,557,371 - +0.2
2,557,539 - DVU2454 0.25 -1.6
2,557,714 + -1.7
2,557,791 + -1.1
2,557,791 + +0.2
2,557,794 - +1.0
2,557,867 - +0.0
2,557,875 + -0.1
2,557,954 - -0.4
2,557,954 - -0.8
2,557,954 - -0.1
2,558,029 + DVU2455 0.14 -0.5
2,558,054 + DVU2455 0.17 +0.1
2,558,362 - DVU2455 0.49 -0.3
2,558,524 + DVU2455 0.66 -0.5
2,558,532 - DVU2455 0.67 -0.1
2,558,609 - DVU2455 0.75 -1.1
2,558,793 - -0.1
2,558,994 - +0.3
2,559,016 + -1.0

Or see this region's nucleotide sequence