Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0948 and DVU0949 are separated by 47 nucleotides DVU0949 and moeA-2 are separated by 79 nucleotides moeA-2 and DVU0952 are separated by 1 nucleotides
DVU0948: DVU0948 - conserved hypothetical protein (TIGR), at 1,042,559 to 1,042,987
DVU0948
DVU0949: DVU0949 - conserved domain protein (TIGR), at 1,043,035 to 1,043,796
DVU0949
DVU0951: moeA-2 - molybdopterin biosynthesis MoeA protein, putative (TIGR), at 1,043,876 to 1,045,294
moeA-2
DVU0952: DVU0952 - conserved hypothetical protein TIGR00282 (TIGR), at 1,045,296 to 1,046,168
DVU0952
Position (kb)
1043
1044
1045
1046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1042.878 kb on - strand, within DVU0948 at 1042.952 kb on - strand at 1043.032 kb on + strand at 1043.047 kb on + strand at 1043.047 kb on + strand at 1043.117 kb on - strand, within DVU0949 at 1043.185 kb on - strand, within DVU0949 at 1043.246 kb on + strand, within DVU0949 at 1043.278 kb on - strand, within DVU0949 at 1043.367 kb on - strand, within DVU0949 at 1043.452 kb on - strand, within DVU0949 at 1043.469 kb on - strand, within DVU0949 at 1043.482 kb on + strand, within DVU0949 at 1043.501 kb on + strand, within DVU0949 at 1043.506 kb on + strand, within DVU0949 at 1043.532 kb on + strand, within DVU0949 at 1043.567 kb on - strand, within DVU0949 at 1043.587 kb on - strand, within DVU0949 at 1043.655 kb on - strand, within DVU0949 at 1043.666 kb on - strand, within DVU0949 at 1043.753 kb on + strand at 1043.901 kb on - strand at 1043.905 kb on + strand at 1043.915 kb on + strand at 1043.915 kb on + strand at 1043.942 kb on + strand at 1043.989 kb on + strand at 1044.210 kb on + strand, within moeA-2 at 1044.234 kb on + strand, within moeA-2 at 1044.254 kb on + strand, within moeA-2 at 1044.335 kb on - strand, within moeA-2 at 1044.477 kb on - strand, within moeA-2 at 1044.488 kb on + strand, within moeA-2 at 1044.683 kb on - strand, within moeA-2 at 1044.737 kb on + strand, within moeA-2 at 1044.802 kb on - strand, within moeA-2 at 1044.943 kb on + strand, within moeA-2 at 1044.944 kb on + strand, within moeA-2 at 1044.972 kb on - strand, within moeA-2 at 1045.056 kb on + strand, within moeA-2 at 1045.076 kb on - strand, within moeA-2 at 1045.142 kb on + strand, within moeA-2 at 1045.189 kb on + strand at 1045.287 kb on - strand at 1045.288 kb on + strand at 1045.296 kb on - strand at 1045.339 kb on + strand at 1045.347 kb on - strand at 1045.347 kb on - strand at 1045.349 kb on + strand at 1045.479 kb on + strand, within DVU0952 at 1045.479 kb on + strand, within DVU0952 at 1045.600 kb on - strand, within DVU0952 at 1045.629 kb on - strand, within DVU0952 at 1045.718 kb on + strand, within DVU0952 at 1045.726 kb on - strand, within DVU0952 at 1045.752 kb on + strand, within DVU0952 at 1045.781 kb on - strand, within DVU0952 at 1045.781 kb on - strand, within DVU0952 at 1045.807 kb on - strand, within DVU0952 at 1045.856 kb on - strand, within DVU0952 at 1045.925 kb on + strand, within DVU0952 at 1045.925 kb on + strand, within DVU0952 at 1045.935 kb on + strand, within DVU0952 at 1045.970 kb on + strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1046.072 kb on + strand, within DVU0952 at 1046.072 kb on + strand, within DVU0952 at 1046.074 kb on + strand, within DVU0952 at 1046.074 kb on + strand, within DVU0952 at 1046.149 kb on + strand at 1046.169 kb on - strand at 1046.169 kb on - strand at 1046.188 kb on + strand at 1046.217 kb on + strand at 1046.220 kb on - strand at 1046.222 kb on + strand at 1046.222 kb on + strand at 1046.222 kb on + strand at 1046.222 kb on + strand at 1046.230 kb on - strand at 1046.230 kb on - strand at 1046.230 kb on - strand at 1046.230 kb on - strand at 1046.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 1,042,878 - DVU0948 0.74 +0.3 1,042,952 - -0.2 1,043,032 + -0.3 1,043,047 + -0.2 1,043,047 + -1.2 1,043,117 - DVU0949 0.11 +0.3 1,043,185 - DVU0949 0.20 +1.4 1,043,246 + DVU0949 0.28 -0.4 1,043,278 - DVU0949 0.32 -0.1 1,043,367 - DVU0949 0.44 -0.7 1,043,452 - DVU0949 0.55 -1.0 1,043,469 - DVU0949 0.57 -2.1 1,043,482 + DVU0949 0.59 +0.8 1,043,501 + DVU0949 0.61 -0.3 1,043,506 + DVU0949 0.62 -0.1 1,043,532 + DVU0949 0.65 +0.2 1,043,567 - DVU0949 0.70 -0.4 1,043,587 - DVU0949 0.72 -0.5 1,043,655 - DVU0949 0.81 +0.0 1,043,666 - DVU0949 0.83 -0.3 1,043,753 + +0.1 1,043,901 - -0.1 1,043,905 + +0.9 1,043,915 + +0.0 1,043,915 + -0.5 1,043,942 + -0.1 1,043,989 + -0.4 1,044,210 + moeA-2 DVU0951 0.24 -0.6 1,044,234 + moeA-2 DVU0951 0.25 +0.2 1,044,254 + moeA-2 DVU0951 0.27 -1.0 1,044,335 - moeA-2 DVU0951 0.32 -1.2 1,044,477 - moeA-2 DVU0951 0.42 -1.6 1,044,488 + moeA-2 DVU0951 0.43 +0.2 1,044,683 - moeA-2 DVU0951 0.57 -0.3 1,044,737 + moeA-2 DVU0951 0.61 -0.1 1,044,802 - moeA-2 DVU0951 0.65 -0.4 1,044,943 + moeA-2 DVU0951 0.75 -1.2 1,044,944 + moeA-2 DVU0951 0.75 -0.4 1,044,972 - moeA-2 DVU0951 0.77 -0.8 1,045,056 + moeA-2 DVU0951 0.83 -1.2 1,045,076 - moeA-2 DVU0951 0.85 +2.1 1,045,142 + moeA-2 DVU0951 0.89 -1.9 1,045,189 + -0.5 1,045,287 - +0.2 1,045,288 + -1.7 1,045,296 - +0.2 1,045,339 + +0.2 1,045,347 - +1.1 1,045,347 - +0.3 1,045,349 + -0.1 1,045,479 + DVU0952 0.21 -0.3 1,045,479 + DVU0952 0.21 +0.4 1,045,600 - DVU0952 0.35 -0.3 1,045,629 - DVU0952 0.38 -0.3 1,045,718 + DVU0952 0.48 +1.0 1,045,726 - DVU0952 0.49 -0.1 1,045,752 + DVU0952 0.52 -0.6 1,045,781 - DVU0952 0.56 +0.1 1,045,781 - DVU0952 0.56 +0.4 1,045,807 - DVU0952 0.59 -0.8 1,045,856 - DVU0952 0.64 +0.4 1,045,925 + DVU0952 0.72 -1.6 1,045,925 + DVU0952 0.72 +0.7 1,045,935 + DVU0952 0.73 -0.3 1,045,970 + DVU0952 0.77 +0.1 1,045,978 - DVU0952 0.78 +0.2 1,045,978 - DVU0952 0.78 -0.2 1,045,978 - DVU0952 0.78 -0.2 1,045,978 - DVU0952 0.78 +0.2 1,046,072 + DVU0952 0.89 -1.1 1,046,072 + DVU0952 0.89 -0.2 1,046,074 + DVU0952 0.89 +0.5 1,046,074 + DVU0952 0.89 -1.2 1,046,149 + +0.1 1,046,169 - +0.1 1,046,169 - -0.1 1,046,188 + +0.5 1,046,217 + -0.6 1,046,220 - +0.1 1,046,222 + -0.4 1,046,222 + +0.1 1,046,222 + -1.3 1,046,222 + -0.2 1,046,230 - +0.2 1,046,230 - -0.7 1,046,230 - +0.1 1,046,230 - -0.1 1,046,273 - -0.0
Or see this region's nucleotide sequence