Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0770 and DVU0771 are separated by 154 nucleotides DVU0771 and DVU0772 are separated by 241 nucleotides DVU0772 and DVU0773 are separated by 275 nucleotides
DVU0770: DVU0770 - membrane protein, putative (TIGR), at 860,983 to 861,933
DVU0770
DVU0771: DVU0771 - molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family (TIGR), at 862,088 to 863,158
DVU0771
DVU0772: DVU0772 - hypothetical protein (TIGR), at 863,400 to 863,747
DVU0772
DVU0773: DVU0773 - hypothetical protein (TIGR), at 864,023 to 864,262
DVU0773
Position (kb) 862
863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 861.108 kb on + strand, within DVU0770 at 861.161 kb on + strand, within DVU0770 at 861.166 kb on + strand, within DVU0770 at 861.179 kb on - strand, within DVU0770 at 861.250 kb on + strand, within DVU0770 at 861.260 kb on - strand, within DVU0770 at 861.323 kb on + strand, within DVU0770 at 861.323 kb on + strand, within DVU0770 at 861.333 kb on + strand, within DVU0770 at 861.363 kb on - strand, within DVU0770 at 861.371 kb on + strand, within DVU0770 at 861.376 kb on + strand, within DVU0770 at 861.378 kb on - strand, within DVU0770 at 861.378 kb on - strand, within DVU0770 at 861.588 kb on + strand, within DVU0770 at 861.708 kb on - strand, within DVU0770 at 861.742 kb on - strand, within DVU0770 at 861.742 kb on - strand, within DVU0770 at 862.031 kb on + strand at 862.039 kb on + strand at 862.226 kb on - strand, within DVU0771 at 862.250 kb on + strand, within DVU0771 at 862.255 kb on - strand, within DVU0771 at 862.328 kb on + strand, within DVU0771 at 862.328 kb on + strand, within DVU0771 at 862.377 kb on + strand, within DVU0771 at 862.393 kb on - strand, within DVU0771 at 862.394 kb on - strand, within DVU0771 at 862.443 kb on - strand, within DVU0771 at 862.483 kb on - strand, within DVU0771 at 862.516 kb on + strand, within DVU0771 at 862.517 kb on + strand, within DVU0771 at 862.523 kb on - strand, within DVU0771 at 862.579 kb on - strand, within DVU0771 at 862.600 kb on - strand, within DVU0771 at 862.609 kb on + strand, within DVU0771 at 862.754 kb on - strand, within DVU0771 at 862.770 kb on + strand, within DVU0771 at 862.778 kb on - strand, within DVU0771 at 862.796 kb on + strand, within DVU0771 at 862.888 kb on + strand, within DVU0771 at 863.007 kb on - strand, within DVU0771 at 863.009 kb on + strand, within DVU0771 at 863.084 kb on - strand at 863.085 kb on + strand at 863.113 kb on - strand at 863.161 kb on - strand at 863.396 kb on + strand at 863.424 kb on - strand at 863.430 kb on + strand at 863.562 kb on + strand, within DVU0772 at 863.570 kb on - strand, within DVU0772 at 863.590 kb on - strand, within DVU0772 at 863.640 kb on - strand, within DVU0772 at 863.740 kb on - strand at 863.832 kb on - strand at 863.832 kb on - strand at 863.832 kb on - strand at 863.929 kb on - strand at 863.957 kb on + strand at 863.965 kb on - strand at 863.965 kb on - strand at 863.965 kb on - strand at 863.965 kb on - strand at 863.965 kb on - strand at 863.998 kb on + strand at 863.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 861,108 + DVU0770 0.13 +0.1 861,161 + DVU0770 0.19 -2.9 861,166 + DVU0770 0.19 -1.6 861,179 - DVU0770 0.21 +0.1 861,250 + DVU0770 0.28 -0.9 861,260 - DVU0770 0.29 -0.3 861,323 + DVU0770 0.36 -0.4 861,323 + DVU0770 0.36 +0.6 861,333 + DVU0770 0.37 -0.1 861,363 - DVU0770 0.40 +0.1 861,371 + DVU0770 0.41 +0.0 861,376 + DVU0770 0.41 -0.1 861,378 - DVU0770 0.42 +0.1 861,378 - DVU0770 0.42 -0.0 861,588 + DVU0770 0.64 -0.2 861,708 - DVU0770 0.76 +0.3 861,742 - DVU0770 0.80 -0.0 861,742 - DVU0770 0.80 +0.0 862,031 + -0.4 862,039 + +2.6 862,226 - DVU0771 0.13 +0.1 862,250 + DVU0771 0.15 -0.8 862,255 - DVU0771 0.16 -0.1 862,328 + DVU0771 0.22 -0.9 862,328 + DVU0771 0.22 +0.1 862,377 + DVU0771 0.27 -0.5 862,393 - DVU0771 0.28 -0.4 862,394 - DVU0771 0.29 -0.6 862,443 - DVU0771 0.33 -0.7 862,483 - DVU0771 0.37 -0.1 862,516 + DVU0771 0.40 -0.8 862,517 + DVU0771 0.40 +0.3 862,523 - DVU0771 0.41 +0.2 862,579 - DVU0771 0.46 -0.2 862,600 - DVU0771 0.48 +0.3 862,609 + DVU0771 0.49 +0.8 862,754 - DVU0771 0.62 +0.7 862,770 + DVU0771 0.64 -1.8 862,778 - DVU0771 0.64 -1.4 862,796 + DVU0771 0.66 -0.3 862,888 + DVU0771 0.75 -0.4 863,007 - DVU0771 0.86 +0.1 863,009 + DVU0771 0.86 -0.8 863,084 - +0.6 863,085 + +0.6 863,113 - -0.5 863,161 - -0.1 863,396 + -0.7 863,424 - -2.5 863,430 + -0.0 863,562 + DVU0772 0.47 -0.9 863,570 - DVU0772 0.49 +0.0 863,590 - DVU0772 0.55 -0.5 863,640 - DVU0772 0.69 +0.2 863,740 - -1.8 863,832 - -0.9 863,832 - -0.4 863,832 - +1.4 863,929 - -0.2 863,957 + -1.0 863,965 - +0.2 863,965 - +1.5 863,965 - -0.7 863,965 - +0.1 863,965 - -0.1 863,998 + -0.0 863,998 + -0.3
Or see this region's nucleotide sequence