Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0755 and DVU0756 are separated by 211 nucleotides DVU0756 and DVU0757 overlap by 1 nucleotides DVU0757 and DVU0758 are separated by 204 nucleotides DVU0758 and DVU0759 overlap by 23 nucleotides
DVU0755: DVU0755 - sensor histidine kinase, putative (TIGR), at 846,505 to 847,872
DVU0755
DVU0756: DVU0756 - TPR domain protein (TIGR), at 848,084 to 848,797
DVU0756
DVU0757: DVU0757 - hypothetical protein (TIGR), at 848,797 to 849,117
DVU0757
DVU0758: DVU0758 - hypothetical protein (TIGR), at 849,322 to 849,771
DVU0758
DVU0759: DVU0759 - peptidase, M29 family (TIGR), at 849,749 to 850,954
DVU0759
Position (kb) 848
849 Strain fitness (log2 ratio) -2
-1
0
1 at 847.211 kb on + strand, within DVU0755 at 847.359 kb on + strand, within DVU0755 at 847.449 kb on - strand, within DVU0755 at 847.485 kb on + strand, within DVU0755 at 847.493 kb on - strand, within DVU0755 at 847.591 kb on - strand, within DVU0755 at 847.592 kb on - strand, within DVU0755 at 847.600 kb on + strand, within DVU0755 at 847.613 kb on - strand, within DVU0755 at 847.613 kb on - strand, within DVU0755 at 847.628 kb on + strand, within DVU0755 at 847.630 kb on - strand, within DVU0755 at 847.693 kb on + strand, within DVU0755 at 847.758 kb on + strand at 847.773 kb on - strand at 847.849 kb on + strand at 847.857 kb on - strand at 847.882 kb on + strand at 847.916 kb on + strand at 847.941 kb on + strand at 848.018 kb on - strand at 848.132 kb on + strand at 848.149 kb on + strand at 848.243 kb on + strand, within DVU0756 at 848.251 kb on - strand, within DVU0756 at 848.284 kb on + strand, within DVU0756 at 848.304 kb on + strand, within DVU0756 at 848.381 kb on - strand, within DVU0756 at 848.385 kb on + strand, within DVU0756 at 848.393 kb on - strand, within DVU0756 at 848.393 kb on - strand, within DVU0756 at 848.418 kb on - strand, within DVU0756 at 848.470 kb on - strand, within DVU0756 at 848.530 kb on - strand, within DVU0756 at 848.554 kb on - strand, within DVU0756 at 848.557 kb on - strand, within DVU0756 at 848.598 kb on - strand, within DVU0756 at 848.608 kb on + strand, within DVU0756 at 848.692 kb on - strand, within DVU0756 at 848.945 kb on - strand, within DVU0757 at 848.984 kb on + strand, within DVU0757 at 848.984 kb on + strand, within DVU0757 at 848.989 kb on + strand, within DVU0757 at 848.992 kb on - strand, within DVU0757 at 848.992 kb on - strand, within DVU0757 at 849.005 kb on - strand, within DVU0757 at 849.027 kb on - strand, within DVU0757 at 849.166 kb on - strand at 849.224 kb on + strand at 849.317 kb on - strand at 849.317 kb on - strand at 849.345 kb on - strand at 849.486 kb on - strand, within DVU0758 at 849.585 kb on + strand, within DVU0758 at 849.618 kb on - strand, within DVU0758 at 849.618 kb on - strand, within DVU0758 at 849.619 kb on - strand, within DVU0758 at 849.619 kb on - strand, within DVU0758 at 849.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 847,211 + DVU0755 0.52 +0.0 847,359 + DVU0755 0.62 -0.9 847,449 - DVU0755 0.69 +0.3 847,485 + DVU0755 0.72 -0.4 847,493 - DVU0755 0.72 -0.0 847,591 - DVU0755 0.79 -0.3 847,592 - DVU0755 0.79 -0.5 847,600 + DVU0755 0.80 +0.4 847,613 - DVU0755 0.81 -0.6 847,613 - DVU0755 0.81 -0.5 847,628 + DVU0755 0.82 -0.0 847,630 - DVU0755 0.82 -0.4 847,693 + DVU0755 0.87 +0.1 847,758 + -0.1 847,773 - -0.1 847,849 + +0.4 847,857 - -1.4 847,882 + +0.3 847,916 + -0.3 847,941 + -0.3 848,018 - -0.1 848,132 + -0.2 848,149 + -1.0 848,243 + DVU0756 0.22 -0.7 848,251 - DVU0756 0.23 -0.4 848,284 + DVU0756 0.28 -1.8 848,304 + DVU0756 0.31 +0.2 848,381 - DVU0756 0.42 -0.9 848,385 + DVU0756 0.42 +1.0 848,393 - DVU0756 0.43 -0.6 848,393 - DVU0756 0.43 -1.8 848,418 - DVU0756 0.47 -0.1 848,470 - DVU0756 0.54 -0.6 848,530 - DVU0756 0.62 -0.3 848,554 - DVU0756 0.66 -0.2 848,557 - DVU0756 0.66 -0.7 848,598 - DVU0756 0.72 -1.6 848,608 + DVU0756 0.73 -1.3 848,692 - DVU0756 0.85 -0.2 848,945 - DVU0757 0.46 -0.1 848,984 + DVU0757 0.58 +0.3 848,984 + DVU0757 0.58 +0.2 848,989 + DVU0757 0.60 -0.1 848,992 - DVU0757 0.61 -0.1 848,992 - DVU0757 0.61 -0.4 849,005 - DVU0757 0.65 +0.1 849,027 - DVU0757 0.72 -0.9 849,166 - +0.0 849,224 + -1.0 849,317 - -0.3 849,317 - +0.1 849,345 - +0.2 849,486 - DVU0758 0.36 -0.2 849,585 + DVU0758 0.58 -0.9 849,618 - DVU0758 0.66 -1.5 849,618 - DVU0758 0.66 +0.4 849,619 - DVU0758 0.66 -0.2 849,619 - DVU0758 0.66 -0.0 849,756 + +0.1
Or see this region's nucleotide sequence