Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0706

Experiment: MoYLS4 with Cefoxitin 5ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdctM and DVU0706 overlap by 4 nucleotidesDVU0706 and dctP are separated by 84 nucleotides DVU0705: dctM - TRAP dicarboxylate transporter, putative (TIGR), at 785,091 to 786,374 dctM DVU0706: DVU0706 - membrane protein, putative (TIGR), at 786,371 to 786,841 DVU0706 DVU0707: dctP - TRAP dicarboxylate family transporter (TIGR), at 786,926 to 787,942 dctP Position (kb) 786 787Strain fitness (log2 ratio) -2 -1 0 1 2at 785.576 kb on + strand, within dctMat 785.740 kb on - strand, within dctMat 785.825 kb on + strand, within dctMat 785.852 kb on - strand, within dctMat 785.904 kb on + strand, within dctMat 785.909 kb on + strand, within dctMat 785.980 kb on + strand, within dctMat 786.081 kb on + strand, within dctMat 786.107 kb on - strand, within dctMat 786.135 kb on + strand, within dctMat 786.171 kb on + strand, within dctMat 786.171 kb on + strand, within dctMat 786.318 kb on - strandat 786.336 kb on - strandat 786.378 kb on - strandat 786.398 kb on + strandat 786.406 kb on - strandat 786.450 kb on + strand, within DVU0706at 786.566 kb on - strand, within DVU0706at 786.733 kb on - strand, within DVU0706at 786.780 kb on + strand, within DVU0706at 786.780 kb on + strand, within DVU0706at 786.788 kb on - strand, within DVU0706at 786.788 kb on - strand, within DVU0706at 786.972 kb on + strandat 787.026 kb on + strandat 787.034 kb on - strand, within dctPat 787.049 kb on - strand, within dctPat 787.099 kb on + strand, within dctPat 787.205 kb on - strand, within dctPat 787.212 kb on - strand, within dctPat 787.226 kb on - strand, within dctPat 787.226 kb on - strand, within dctPat 787.244 kb on + strand, within dctPat 787.285 kb on - strand, within dctPat 787.310 kb on - strand, within dctPat 787.310 kb on - strand, within dctPat 787.509 kb on + strand, within dctPat 787.548 kb on + strand, within dctPat 787.575 kb on + strand, within dctPat 787.600 kb on - strand, within dctPat 787.690 kb on - strand, within dctPat 787.690 kb on - strand, within dctPat 787.713 kb on + strand, within dctPat 787.790 kb on + strand, within dctPat 787.836 kb on + strand, within dctP

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL
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785,576 + dctM DVU0705 0.38 -0.1
785,740 - dctM DVU0705 0.51 -0.6
785,825 + dctM DVU0705 0.57 -0.1
785,852 - dctM DVU0705 0.59 -1.4
785,904 + dctM DVU0705 0.63 -1.5
785,909 + dctM DVU0705 0.64 -1.1
785,980 + dctM DVU0705 0.69 +0.7
786,081 + dctM DVU0705 0.77 -0.1
786,107 - dctM DVU0705 0.79 -0.1
786,135 + dctM DVU0705 0.81 -1.2
786,171 + dctM DVU0705 0.84 +0.1
786,171 + dctM DVU0705 0.84 -0.5
786,318 - -1.0
786,336 - +0.2
786,378 - +0.0
786,398 + +0.0
786,406 - -0.3
786,450 + DVU0706 0.17 -0.2
786,566 - DVU0706 0.41 -0.8
786,733 - DVU0706 0.77 +1.0
786,780 + DVU0706 0.87 -0.6
786,780 + DVU0706 0.87 -0.7
786,788 - DVU0706 0.89 -1.0
786,788 - DVU0706 0.89 -0.2
786,972 + +0.4
787,026 + +0.3
787,034 - dctP DVU0707 0.11 +1.0
787,049 - dctP DVU0707 0.12 -0.2
787,099 + dctP DVU0707 0.17 -1.0
787,205 - dctP DVU0707 0.27 -0.1
787,212 - dctP DVU0707 0.28 -0.4
787,226 - dctP DVU0707 0.29 -0.7
787,226 - dctP DVU0707 0.29 +0.6
787,244 + dctP DVU0707 0.31 -0.7
787,285 - dctP DVU0707 0.35 -0.9
787,310 - dctP DVU0707 0.38 -1.6
787,310 - dctP DVU0707 0.38 -0.2
787,509 + dctP DVU0707 0.57 +0.7
787,548 + dctP DVU0707 0.61 +0.1
787,575 + dctP DVU0707 0.64 -0.3
787,600 - dctP DVU0707 0.66 -0.1
787,690 - dctP DVU0707 0.75 +2.6
787,690 - dctP DVU0707 0.75 +0.1
787,713 + dctP DVU0707 0.77 -0.1
787,790 + dctP DVU0707 0.85 +0.4
787,836 + dctP DVU0707 0.89 -2.3

Or see this region's nucleotide sequence