Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0688 and rnhA are separated by 9 nucleotides rnhA and DORF29743 are separated by 166 nucleotides DORF29743 and DVU0690 are separated by 75 nucleotides DVU0690 and DVU0691 are separated by 14 nucleotides
DVU0688: DVU0688 - hypothetical protein (TIGR), at 763,007 to 763,507
DVU0688
DVU0689: rnhA - ribonuclease HI (TIGR), at 763,517 to 763,987
rnhA
DORF29743: DORF29743 - no description, at 764,154 to 764,273
DORF29743
DVU0690: DVU0690 - conserved hypothetical protein (TIGR), at 764,349 to 765,020
DVU0690
DVU0691: DVU0691 - membrane protein, putative (TIGR), at 765,035 to 765,994
DVU0691
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1
2 at 763.374 kb on - strand, within DVU0688 at 763.417 kb on - strand, within DVU0688 at 763.530 kb on + strand at 763.727 kb on + strand, within rnhA at 763.786 kb on - strand, within rnhA at 764.084 kb on + strand at 764.087 kb on - strand at 764.168 kb on + strand, within DORF29743 at 764.230 kb on - strand, within DORF29743 at 764.347 kb on + strand at 764.351 kb on + strand at 764.396 kb on - strand at 764.538 kb on + strand, within DVU0690 at 764.707 kb on + strand, within DVU0690 at 764.730 kb on + strand, within DVU0690 at 764.738 kb on - strand, within DVU0690 at 764.825 kb on - strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.845 kb on - strand, within DVU0690 at 764.857 kb on + strand, within DVU0690 at 764.993 kb on + strand at 765.071 kb on - strand at 765.074 kb on + strand at 765.100 kb on + strand at 765.339 kb on + strand, within DVU0691 at 765.380 kb on + strand, within DVU0691 at 765.380 kb on + strand, within DVU0691 at 765.380 kb on + strand, within DVU0691 at 765.388 kb on - strand, within DVU0691 at 765.388 kb on - strand, within DVU0691 at 765.400 kb on + strand, within DVU0691 at 765.451 kb on - strand, within DVU0691 at 765.498 kb on - strand, within DVU0691 at 765.550 kb on - strand, within DVU0691 at 765.593 kb on - strand, within DVU0691 at 765.669 kb on - strand, within DVU0691 at 765.678 kb on + strand, within DVU0691 at 765.710 kb on + strand, within DVU0691 at 765.743 kb on - strand, within DVU0691 at 765.753 kb on - strand, within DVU0691 at 765.769 kb on - strand, within DVU0691 at 765.791 kb on + strand, within DVU0691 at 765.853 kb on - strand, within DVU0691 at 765.915 kb on + strand at 765.915 kb on + strand at 765.923 kb on - strand at 765.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 763,374 - DVU0688 0.73 +0.0 763,417 - DVU0688 0.82 -0.1 763,530 + +0.0 763,727 + rnhA DVU0689 0.45 +0.0 763,786 - rnhA DVU0689 0.57 -1.1 764,084 + -0.5 764,087 - -0.0 764,168 + DORF29743 0.12 -0.0 764,230 - DORF29743 0.63 +0.2 764,347 + -0.0 764,351 + +0.6 764,396 - +0.2 764,538 + DVU0690 0.28 -1.1 764,707 + DVU0690 0.53 +0.3 764,730 + DVU0690 0.57 -0.5 764,738 - DVU0690 0.58 +1.0 764,825 - DVU0690 0.71 -0.7 764,837 + DVU0690 0.73 -1.0 764,837 + DVU0690 0.73 +0.2 764,837 + DVU0690 0.73 -1.0 764,845 - DVU0690 0.74 -1.6 764,857 + DVU0690 0.76 -0.8 764,993 + -0.6 765,071 - -0.6 765,074 + -0.3 765,100 + +0.0 765,339 + DVU0691 0.32 -0.2 765,380 + DVU0691 0.36 +0.3 765,380 + DVU0691 0.36 -0.4 765,380 + DVU0691 0.36 -0.4 765,388 - DVU0691 0.37 -0.3 765,388 - DVU0691 0.37 -0.3 765,400 + DVU0691 0.38 -0.6 765,451 - DVU0691 0.43 -0.3 765,498 - DVU0691 0.48 +0.1 765,550 - DVU0691 0.54 -0.9 765,593 - DVU0691 0.58 -0.3 765,669 - DVU0691 0.66 +0.2 765,678 + DVU0691 0.67 -0.1 765,710 + DVU0691 0.70 +1.6 765,743 - DVU0691 0.74 -0.2 765,753 - DVU0691 0.75 -2.1 765,769 - DVU0691 0.76 +0.8 765,791 + DVU0691 0.79 +0.2 765,853 - DVU0691 0.85 -0.2 765,915 + +0.1 765,915 + +0.1 765,923 - -0.3 765,933 + +2.5
Or see this region's nucleotide sequence