Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0194 and DVU0195 overlap by 4 nucleotides DVU0195 and DORF26313 overlap by 8 nucleotides DORF26313 and DVU0196 are separated by 362 nucleotides DVU0196 and DVU0197 are separated by 3 nucleotides
DVU0194: DVU0194 - terminase, large subunit, putative (TIGR), at 239,489 to 241,447
DVU0194
DVU0195: DVU0195 - hypothetical protein (TIGR), at 241,444 to 241,662
DVU0195
DORF26313: DORF26313 - no description, at 241,655 to 242,083
DORF26313
DVU0196: DVU0196 - hypothetical protein (TIGR), at 242,446 to 242,586
DVU0196
DVU0197: DVU0197 - phage portal protein, lambda family (TIGR), at 242,590 to 244,290
DVU0197
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1 at 240.656 kb on - strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.678 kb on + strand, within DVU0194 at 240.684 kb on + strand, within DVU0194 at 240.686 kb on - strand, within DVU0194 at 240.751 kb on + strand, within DVU0194 at 240.751 kb on + strand, within DVU0194 at 240.759 kb on - strand, within DVU0194 at 240.814 kb on - strand, within DVU0194 at 240.940 kb on - strand, within DVU0194 at 241.258 kb on + strand at 241.291 kb on + strand at 241.309 kb on - strand at 241.326 kb on + strand at 241.373 kb on - strand at 241.383 kb on - strand at 241.426 kb on - strand at 241.428 kb on + strand at 241.428 kb on + strand at 241.437 kb on - strand at 241.449 kb on - strand at 241.449 kb on - strand at 241.580 kb on + strand, within DVU0195 at 241.588 kb on - strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.612 kb on - strand, within DVU0195 at 241.726 kb on + strand, within DORF26313 at 241.726 kb on - strand, within DORF26313 at 241.783 kb on + strand, within DORF26313 at 241.976 kb on - strand, within DORF26313 at 242.031 kb on + strand, within DORF26313 at 242.034 kb on - strand, within DORF26313 at 242.050 kb on - strand at 242.075 kb on + strand at 242.077 kb on + strand at 242.077 kb on + strand at 242.140 kb on - strand at 242.162 kb on - strand at 242.181 kb on - strand at 242.206 kb on - strand at 242.206 kb on - strand at 242.330 kb on - strand at 242.347 kb on + strand at 242.347 kb on + strand at 242.442 kb on + strand at 242.543 kb on + strand, within DVU0196 at 242.657 kb on + strand at 242.690 kb on - strand at 242.754 kb on + strand at 242.780 kb on + strand, within DVU0197 at 242.788 kb on - strand, within DVU0197 at 242.788 kb on - strand, within DVU0197 at 242.802 kb on - strand, within DVU0197 at 242.873 kb on + strand, within DVU0197 at 242.950 kb on - strand, within DVU0197 at 243.025 kb on + strand, within DVU0197 at 243.048 kb on + strand, within DVU0197
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 240,656 - DVU0194 0.60 +0.2 240,656 - DVU0194 0.60 +0.0 240,656 - DVU0194 0.60 -0.7 240,678 + DVU0194 0.61 +0.3 240,684 + DVU0194 0.61 -0.5 240,686 - DVU0194 0.61 -0.2 240,751 + DVU0194 0.64 +0.2 240,751 + DVU0194 0.64 +0.3 240,759 - DVU0194 0.65 -0.0 240,814 - DVU0194 0.68 +0.1 240,940 - DVU0194 0.74 -0.2 241,258 + -0.2 241,291 + +0.3 241,309 - -0.1 241,326 + +0.0 241,373 - -1.1 241,383 - +0.1 241,426 - -0.2 241,428 + -0.2 241,428 + -0.4 241,437 - -0.0 241,449 - -1.5 241,449 - -1.3 241,580 + DVU0195 0.62 -0.0 241,588 - DVU0195 0.66 -0.2 241,604 + DVU0195 0.73 -0.1 241,604 + DVU0195 0.73 -0.8 241,604 + DVU0195 0.73 +0.3 241,604 + DVU0195 0.73 +0.2 241,612 - DVU0195 0.77 -1.1 241,726 + DORF26313 0.17 +0.1 241,726 - DORF26313 0.17 -0.2 241,783 + DORF26313 0.30 -2.3 241,976 - DORF26313 0.75 -2.2 242,031 + DORF26313 0.88 -0.1 242,034 - DORF26313 0.88 -2.2 242,050 - -0.0 242,075 + -0.5 242,077 + -1.4 242,077 + -0.0 242,140 - -0.1 242,162 - -0.2 242,181 - -0.2 242,206 - -0.8 242,206 - -0.3 242,330 - -0.4 242,347 + -0.3 242,347 + +0.1 242,442 + +0.1 242,543 + DVU0196 0.69 -0.5 242,657 + -0.1 242,690 - -0.3 242,754 + +1.5 242,780 + DVU0197 0.11 +0.1 242,788 - DVU0197 0.12 -0.2 242,788 - DVU0197 0.12 -0.2 242,802 - DVU0197 0.12 -0.1 242,873 + DVU0197 0.17 -0.9 242,950 - DVU0197 0.21 -1.7 243,025 + DVU0197 0.26 -0.2 243,048 + DVU0197 0.27 -0.9
Or see this region's nucleotide sequence