Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS33375

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05520 and ECOLIN_RS05525 are separated by 64 nucleotidesECOLIN_RS05525 and ECOLIN_RS33375 are separated by 515 nucleotidesECOLIN_RS33375 and ECOLIN_RS32715 overlap by 2 nucleotides ECOLIN_RS05520: ECOLIN_RS05520 - methyltransferase, at 1,129,913 to 1,130,971 _RS05520 ECOLIN_RS05525: ECOLIN_RS05525 - hypothetical protein, at 1,131,036 to 1,131,425 _RS05525 ECOLIN_RS33375: ECOLIN_RS33375 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,131,941 to 1,132,120 _RS33375 ECOLIN_RS32715: ECOLIN_RS32715 - hemagglutinin repeat-containing protein, at 1,132,119 to 1,137,481 _RS32715 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -1 0 1at 1131.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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1,131,484 - -0.5

Or see this region's nucleotide sequence