Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10870

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10865 and ECOLIN_RS10870 are separated by 61 nucleotidesECOLIN_RS10870 and ECOLIN_RS10875 are separated by 195 nucleotidesECOLIN_RS10875 and ECOLIN_RS10880 are separated by 12 nucleotidesECOLIN_RS10880 and ECOLIN_RS10885 are separated by 53 nucleotidesECOLIN_RS10885 and ECOLIN_RS10890 are separated by 151 nucleotides ECOLIN_RS10865: ECOLIN_RS10865 - tyrosine transporter TyrP, at 2,114,521 to 2,115,732 _RS10865 ECOLIN_RS10870: ECOLIN_RS10870 - UPF0149 family protein YecA, at 2,115,794 to 2,116,459 _RS10870 ECOLIN_RS10875: ECOLIN_RS10875 - tRNA-Leu, at 2,116,655 to 2,116,741 _RS10875 ECOLIN_RS10880: ECOLIN_RS10880 - tRNA-Cys, at 2,116,754 to 2,116,827 _RS10880 ECOLIN_RS10885: ECOLIN_RS10885 - tRNA-Gly, at 2,116,881 to 2,116,956 _RS10885 ECOLIN_RS10890: ECOLIN_RS10890 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,117,108 to 2,117,656 _RS10890 Position (kb) 2115 2116 2117Strain fitness (log2 ratio) -1 0 1at 2114.794 kb on + strand, within ECOLIN_RS10865at 2114.794 kb on + strand, within ECOLIN_RS10865at 2114.794 kb on + strand, within ECOLIN_RS10865at 2114.812 kb on + strand, within ECOLIN_RS10865at 2114.812 kb on + strand, within ECOLIN_RS10865at 2115.138 kb on + strand, within ECOLIN_RS10865at 2115.207 kb on + strand, within ECOLIN_RS10865at 2115.362 kb on + strand, within ECOLIN_RS10865at 2115.402 kb on - strand, within ECOLIN_RS10865at 2115.438 kb on + strand, within ECOLIN_RS10865at 2116.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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2,114,794 + ECOLIN_RS10865 0.23 +0.1
2,114,794 + ECOLIN_RS10865 0.23 +0.1
2,114,794 + ECOLIN_RS10865 0.23 -1.2
2,114,812 + ECOLIN_RS10865 0.24 +0.1
2,114,812 + ECOLIN_RS10865 0.24 -0.1
2,115,138 + ECOLIN_RS10865 0.51 -0.2
2,115,207 + ECOLIN_RS10865 0.57 -0.0
2,115,362 + ECOLIN_RS10865 0.69 -0.4
2,115,402 - ECOLIN_RS10865 0.73 -0.9
2,115,438 + ECOLIN_RS10865 0.76 +0.1
2,116,399 - +0.1

Or see this region's nucleotide sequence