Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10115

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10110 and ECOLIN_RS10115 are separated by 62 nucleotidesECOLIN_RS10115 and ECOLIN_RS10120 are separated by 12 nucleotidesECOLIN_RS10120 and ECOLIN_RS10125 are separated by 54 nucleotides ECOLIN_RS10110: ECOLIN_RS10110 - PTS mannose transporter subunit IIAB, at 1,986,033 to 1,987,004 _RS10110 ECOLIN_RS10115: ECOLIN_RS10115 - PTS mannose transporter subunit IIC, at 1,987,067 to 1,987,867 _RS10115 ECOLIN_RS10120: ECOLIN_RS10120 - PTS mannose transporter subunit IID, at 1,987,880 to 1,988,731 _RS10120 ECOLIN_RS10125: ECOLIN_RS10125 - DUF986 family protein, at 1,988,786 to 1,989,244 _RS10125 Position (kb) 1987 1988Strain fitness (log2 ratio) -1 0 1at 1988.632 kb on + strand, within ECOLIN_RS10120

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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1,988,632 + ECOLIN_RS10120 0.88 -0.5

Or see this region's nucleotide sequence