Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS05285

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05280 and ECOLIN_RS05285 are separated by 287 nucleotidesECOLIN_RS05285 and ECOLIN_RS05290 are separated by 39 nucleotides ECOLIN_RS05280: ECOLIN_RS05280 - pyrimidine utilization protein A, at 1,079,035 to 1,080,126 _RS05280 ECOLIN_RS05285: ECOLIN_RS05285 - HTH-type transcriptional regulator RutR, at 1,080,414 to 1,081,052 _RS05285 ECOLIN_RS05290: ECOLIN_RS05290 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 1,081,092 to 1,085,054 _RS05290 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -1 0 1at 1081.838 kb on - strand, within ECOLIN_RS05290

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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1,081,838 - ECOLIN_RS05290 0.19 +0.7

Or see this region's nucleotide sequence