Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS21530 and ECOLIN_RS21535 are separated by 4 nucleotides ECOLIN_RS21535 and ECOLIN_RS21540 overlap by 7 nucleotides
ECOLIN_RS21530: ECOLIN_RS21530 - aspartate--ammonia ligase, at 4,323,910 to 4,324,902
_RS21530
ECOLIN_RS21535: ECOLIN_RS21535 - ATPase RavA stimulator ViaA, at 4,324,907 to 4,326,358
_RS21535
ECOLIN_RS21540: ECOLIN_RS21540 - ATPase RavA, at 4,326,352 to 4,327,848
_RS21540
Position (kb) 4324
4325
4326
4327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4323.923 kb on - strand at 4323.945 kb on + strand at 4323.946 kb on - strand at 4324.047 kb on + strand, within ECOLIN_RS21530 at 4324.247 kb on - strand, within ECOLIN_RS21530 at 4324.250 kb on + strand, within ECOLIN_RS21530 at 4324.251 kb on - strand, within ECOLIN_RS21530 at 4324.251 kb on - strand, within ECOLIN_RS21530 at 4324.413 kb on - strand, within ECOLIN_RS21530 at 4324.428 kb on - strand, within ECOLIN_RS21530 at 4324.562 kb on - strand, within ECOLIN_RS21530 at 4324.562 kb on - strand, within ECOLIN_RS21530 at 4324.904 kb on - strand at 4324.963 kb on + strand at 4325.152 kb on + strand, within ECOLIN_RS21535 at 4325.273 kb on + strand, within ECOLIN_RS21535 at 4325.274 kb on - strand, within ECOLIN_RS21535 at 4325.278 kb on + strand, within ECOLIN_RS21535 at 4325.278 kb on + strand, within ECOLIN_RS21535 at 4325.279 kb on - strand, within ECOLIN_RS21535 at 4325.281 kb on + strand, within ECOLIN_RS21535 at 4325.281 kb on + strand, within ECOLIN_RS21535 at 4325.283 kb on + strand, within ECOLIN_RS21535 at 4325.283 kb on + strand, within ECOLIN_RS21535 at 4325.284 kb on - strand, within ECOLIN_RS21535 at 4325.378 kb on - strand, within ECOLIN_RS21535 at 4325.515 kb on - strand, within ECOLIN_RS21535 at 4325.538 kb on - strand, within ECOLIN_RS21535 at 4325.754 kb on + strand, within ECOLIN_RS21535 at 4325.786 kb on - strand, within ECOLIN_RS21535 at 4325.915 kb on + strand, within ECOLIN_RS21535 at 4325.916 kb on - strand, within ECOLIN_RS21535 at 4325.919 kb on - strand, within ECOLIN_RS21535 at 4325.988 kb on - strand, within ECOLIN_RS21535 at 4326.066 kb on - strand, within ECOLIN_RS21535 at 4326.066 kb on - strand, within ECOLIN_RS21535 at 4326.084 kb on - strand, within ECOLIN_RS21535 at 4326.084 kb on - strand, within ECOLIN_RS21535 at 4326.129 kb on + strand, within ECOLIN_RS21535 at 4326.175 kb on + strand, within ECOLIN_RS21535 at 4326.416 kb on - strand at 4326.575 kb on - strand, within ECOLIN_RS21540 at 4326.575 kb on - strand, within ECOLIN_RS21540 at 4326.583 kb on + strand, within ECOLIN_RS21540 at 4326.584 kb on - strand, within ECOLIN_RS21540 at 4326.673 kb on - strand, within ECOLIN_RS21540 at 4326.696 kb on + strand, within ECOLIN_RS21540 at 4326.950 kb on - strand, within ECOLIN_RS21540 at 4326.950 kb on - strand, within ECOLIN_RS21540 at 4326.993 kb on - strand, within ECOLIN_RS21540 at 4327.110 kb on - strand, within ECOLIN_RS21540 at 4327.165 kb on + strand, within ECOLIN_RS21540 at 4327.166 kb on - strand, within ECOLIN_RS21540 at 4327.166 kb on - strand, within ECOLIN_RS21540 at 4327.183 kb on - strand, within ECOLIN_RS21540 at 4327.314 kb on + strand, within ECOLIN_RS21540 at 4327.319 kb on - strand, within ECOLIN_RS21540 at 4327.347 kb on - strand, within ECOLIN_RS21540 at 4327.347 kb on - strand, within ECOLIN_RS21540 at 4327.347 kb on - strand, within ECOLIN_RS21540 at 4327.349 kb on - strand, within ECOLIN_RS21540
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 4,323,923 - -1.0 4,323,945 + +0.6 4,323,946 - +0.9 4,324,047 + ECOLIN_RS21530 0.14 -0.2 4,324,247 - ECOLIN_RS21530 0.34 +0.4 4,324,250 + ECOLIN_RS21530 0.34 -0.6 4,324,251 - ECOLIN_RS21530 0.34 +1.0 4,324,251 - ECOLIN_RS21530 0.34 -0.1 4,324,413 - ECOLIN_RS21530 0.51 -0.8 4,324,428 - ECOLIN_RS21530 0.52 -0.2 4,324,562 - ECOLIN_RS21530 0.66 -0.1 4,324,562 - ECOLIN_RS21530 0.66 +0.8 4,324,904 - -0.4 4,324,963 + -0.7 4,325,152 + ECOLIN_RS21535 0.17 -0.5 4,325,273 + ECOLIN_RS21535 0.25 -0.2 4,325,274 - ECOLIN_RS21535 0.25 -0.3 4,325,278 + ECOLIN_RS21535 0.26 +0.4 4,325,278 + ECOLIN_RS21535 0.26 -0.2 4,325,279 - ECOLIN_RS21535 0.26 -0.9 4,325,281 + ECOLIN_RS21535 0.26 -0.1 4,325,281 + ECOLIN_RS21535 0.26 -0.3 4,325,283 + ECOLIN_RS21535 0.26 -0.1 4,325,283 + ECOLIN_RS21535 0.26 -0.4 4,325,284 - ECOLIN_RS21535 0.26 +0.4 4,325,378 - ECOLIN_RS21535 0.32 -0.3 4,325,515 - ECOLIN_RS21535 0.42 +0.3 4,325,538 - ECOLIN_RS21535 0.43 -0.2 4,325,754 + ECOLIN_RS21535 0.58 -0.3 4,325,786 - ECOLIN_RS21535 0.61 +0.1 4,325,915 + ECOLIN_RS21535 0.69 +0.1 4,325,916 - ECOLIN_RS21535 0.69 +0.0 4,325,919 - ECOLIN_RS21535 0.70 +0.2 4,325,988 - ECOLIN_RS21535 0.74 -0.3 4,326,066 - ECOLIN_RS21535 0.80 -0.3 4,326,066 - ECOLIN_RS21535 0.80 +0.8 4,326,084 - ECOLIN_RS21535 0.81 -0.5 4,326,084 - ECOLIN_RS21535 0.81 +0.4 4,326,129 + ECOLIN_RS21535 0.84 -0.5 4,326,175 + ECOLIN_RS21535 0.87 -1.6 4,326,416 - +0.4 4,326,575 - ECOLIN_RS21540 0.15 +0.2 4,326,575 - ECOLIN_RS21540 0.15 +0.4 4,326,583 + ECOLIN_RS21540 0.15 +0.1 4,326,584 - ECOLIN_RS21540 0.15 +0.4 4,326,673 - ECOLIN_RS21540 0.21 -0.2 4,326,696 + ECOLIN_RS21540 0.23 +0.1 4,326,950 - ECOLIN_RS21540 0.40 +0.1 4,326,950 - ECOLIN_RS21540 0.40 +0.1 4,326,993 - ECOLIN_RS21540 0.43 -0.2 4,327,110 - ECOLIN_RS21540 0.51 -3.8 4,327,165 + ECOLIN_RS21540 0.54 -0.6 4,327,166 - ECOLIN_RS21540 0.54 +0.6 4,327,166 - ECOLIN_RS21540 0.54 +0.1 4,327,183 - ECOLIN_RS21540 0.56 -0.2 4,327,314 + ECOLIN_RS21540 0.64 +0.4 4,327,319 - ECOLIN_RS21540 0.65 +0.2 4,327,347 - ECOLIN_RS21540 0.66 -0.1 4,327,347 - ECOLIN_RS21540 0.66 +0.1 4,327,347 - ECOLIN_RS21540 0.66 +0.7 4,327,349 - ECOLIN_RS21540 0.67 -0.1
Or see this region's nucleotide sequence