Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13045

Experiment: TP7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS13040 and ECOLIN_RS13045 overlap by 1 nucleotidesECOLIN_RS13045 and ECOLIN_RS13050 are separated by 53 nucleotidesECOLIN_RS13050 and ECOLIN_RS13055 are separated by 202 nucleotides ECOLIN_RS13040: ECOLIN_RS13040 - class Ia ribonucleoside-diphosphate reductase subunit beta, at 2,606,252 to 2,607,382 _RS13040 ECOLIN_RS13045: ECOLIN_RS13045 - ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE, at 2,607,382 to 2,607,636 _RS13045 ECOLIN_RS13050: ECOLIN_RS13050 - lipopolysaccharide kinase InaA, at 2,607,690 to 2,608,340 _RS13050 ECOLIN_RS13055: ECOLIN_RS13055 - glycerophosphodiester phosphodiesterase, at 2,608,543 to 2,609,619 _RS13055 Position (kb) 2607 2608Strain fitness (log2 ratio) -1 0 1 2at 2607.405 kb on + strandat 2607.570 kb on + strand, within ECOLIN_RS13045at 2607.704 kb on - strandat 2608.522 kb on - strandat 2608.617 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP7
remove
2,607,405 + +2.4
2,607,570 + ECOLIN_RS13045 0.74 +1.4
2,607,704 - +0.1
2,608,522 - +0.1
2,608,617 - -0.4

Or see this region's nucleotide sequence