Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12690

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12685 and ECOLIN_RS12690 are separated by 366 nucleotidesECOLIN_RS12690 and ECOLIN_RS12695 overlap by 4 nucleotidesECOLIN_RS12695 and ECOLIN_RS12700 are separated by 154 nucleotides ECOLIN_RS12685: ECOLIN_RS12685 - fused PTS fructose transporter subunit IIA/HPr protein, at 2,524,956 to 2,526,086 _RS12685 ECOLIN_RS12690: ECOLIN_RS12690 - sugar efflux transporter SetB, at 2,526,453 to 2,527,634 _RS12690 ECOLIN_RS12695: ECOLIN_RS12695 - YkgJ family cysteine cluster protein, at 2,527,631 to 2,527,885 _RS12695 ECOLIN_RS12700: ECOLIN_RS12700 - elongation factor P-like protein YeiP, at 2,528,040 to 2,528,612 _RS12700 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -1 0 1at 2527.178 kb on + strand, within ECOLIN_RS12690at 2527.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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2,527,178 + ECOLIN_RS12690 0.61 +0.6
2,527,886 - -1.5

Or see this region's nucleotide sequence