Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02995

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02985 and ECOLIN_RS02990 are separated by 128 nucleotidesECOLIN_RS02990 and ECOLIN_RS02995 are separated by 10 nucleotidesECOLIN_RS02995 and ECOLIN_RS03000 are separated by 21 nucleotides ECOLIN_RS02985: ECOLIN_RS02985 - glycerate 3-kinase, at 615,904 to 617,049 _RS02985 ECOLIN_RS02990: ECOLIN_RS02990 - (S)-ureidoglycine aminohydrolase, at 617,178 to 617,963 _RS02990 ECOLIN_RS02995: ECOLIN_RS02995 - allantoate deiminase, at 617,974 to 619,209 _RS02995 ECOLIN_RS03000: ECOLIN_RS03000 - ureidoglycolate dehydrogenase, at 619,231 to 620,280 _RS03000 Position (kb) 617 618 619 620Strain fitness (log2 ratio) -1 0 1at 617.997 kb on - strandat 618.305 kb on - strand, within ECOLIN_RS02995at 618.661 kb on - strand, within ECOLIN_RS02995at 619.081 kb on - strand, within ECOLIN_RS02995

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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617,997 - +0.8
618,305 - ECOLIN_RS02995 0.27 -0.2
618,661 - ECOLIN_RS02995 0.56 -0.9
619,081 - ECOLIN_RS02995 0.90 +0.1

Or see this region's nucleotide sequence