Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS01695

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS01690 and ECOLIN_RS01695 are separated by 60 nucleotidesECOLIN_RS01695 and ECOLIN_RS30355 are separated by 198 nucleotides ECOLIN_RS01690: ECOLIN_RS01690 - type I secretion system permease/ATPase, at 337,512 to 339,659 _RS01690 ECOLIN_RS01695: ECOLIN_RS01695 - HlyD family type I secretion periplasmic adaptor subunit, at 339,720 to 340,967 _RS01695 ECOLIN_RS30355: ECOLIN_RS30355 - hypothetical protein, at 341,166 to 341,975 _RS30355 Position (kb) 339 340 341Strain fitness (log2 ratio) -2 -1 0 1at 338.727 kb on - strand, within ECOLIN_RS01690at 338.727 kb on - strand, within ECOLIN_RS01690at 338.732 kb on + strand, within ECOLIN_RS01690at 338.987 kb on + strand, within ECOLIN_RS01690at 339.688 kb on + strandat 339.743 kb on + strandat 339.878 kb on + strand, within ECOLIN_RS01695at 339.958 kb on + strand, within ECOLIN_RS01695at 339.959 kb on - strand, within ECOLIN_RS01695at 340.386 kb on - strand, within ECOLIN_RS01695at 341.330 kb on - strand, within ECOLIN_RS30355at 341.423 kb on + strand, within ECOLIN_RS30355at 341.426 kb on + strand, within ECOLIN_RS30355

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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338,727 - ECOLIN_RS01690 0.57 +0.3
338,727 - ECOLIN_RS01690 0.57 +0.2
338,732 + ECOLIN_RS01690 0.57 +0.5
338,987 + ECOLIN_RS01690 0.69 -0.1
339,688 + +0.1
339,743 + +0.8
339,878 + ECOLIN_RS01695 0.13 -0.0
339,958 + ECOLIN_RS01695 0.19 -1.4
339,959 - ECOLIN_RS01695 0.19 -2.1
340,386 - ECOLIN_RS01695 0.53 +0.3
341,330 - ECOLIN_RS30355 0.20 +0.3
341,423 + ECOLIN_RS30355 0.32 +1.0
341,426 + ECOLIN_RS30355 0.32 -0.3

Or see this region's nucleotide sequence