Experiment: Bas04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17660 and ECOLIN_RS17665 are separated by 104 nucleotides ECOLIN_RS17665 and ECOLIN_RS17670 are separated by 12 nucleotides ECOLIN_RS17670 and ECOLIN_RS17675 are separated by 206 nucleotides
ECOLIN_RS17660: ECOLIN_RS17660 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 3,558,561 to 3,558,929
_RS17660
ECOLIN_RS17665: ECOLIN_RS17665 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 3,559,034 to 3,559,651
_RS17665
ECOLIN_RS17670: ECOLIN_RS17670 - L-tartrate utilization transcriptional activator TtdR, at 3,559,664 to 3,560,596
_RS17670
ECOLIN_RS17675: ECOLIN_RS17675 - L(+)-tartrate dehydratase subunit alpha, at 3,560,803 to 3,561,714
_RS17675
Position (kb) 3559
3560
3561 Strain fitness (log2 ratio) -1
0
1
2 at 3559.034 kb on - strand at 3559.034 kb on - strand at 3559.173 kb on + strand, within ECOLIN_RS17665 at 3559.174 kb on - strand, within ECOLIN_RS17665 at 3559.260 kb on + strand, within ECOLIN_RS17665 at 3559.287 kb on + strand, within ECOLIN_RS17665 at 3559.288 kb on - strand, within ECOLIN_RS17665 at 3559.787 kb on - strand, within ECOLIN_RS17670 at 3560.588 kb on - strand at 3560.784 kb on + strand at 3561.165 kb on - strand, within ECOLIN_RS17675 at 3561.250 kb on + strand, within ECOLIN_RS17675 at 3561.250 kb on + strand, within ECOLIN_RS17675 at 3561.251 kb on - strand, within ECOLIN_RS17675 at 3561.251 kb on - strand, within ECOLIN_RS17675 at 3561.497 kb on + strand, within ECOLIN_RS17675
Per-strain Table
Position Strand Gene LocusTag Fraction Bas04 remove 3,559,034 - +0.3 3,559,034 - +0.3 3,559,173 + ECOLIN_RS17665 0.22 -0.3 3,559,174 - ECOLIN_RS17665 0.23 -0.4 3,559,260 + ECOLIN_RS17665 0.37 +0.1 3,559,287 + ECOLIN_RS17665 0.41 +0.6 3,559,288 - ECOLIN_RS17665 0.41 -0.0 3,559,787 - ECOLIN_RS17670 0.13 -0.3 3,560,588 - -0.3 3,560,784 + +0.1 3,561,165 - ECOLIN_RS17675 0.40 -0.4 3,561,250 + ECOLIN_RS17675 0.49 +0.4 3,561,250 + ECOLIN_RS17675 0.49 +0.1 3,561,251 - ECOLIN_RS17675 0.49 +0.5 3,561,251 - ECOLIN_RS17675 0.49 +2.4 3,561,497 + ECOLIN_RS17675 0.76 -0.2
Or see this region's nucleotide sequence