Experiment: Bas04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02375 and ECOLIN_RS02380 are separated by 147 nucleotides ECOLIN_RS02380 and ECOLIN_RS31260 overlap by 4 nucleotides ECOLIN_RS31260 and ECOLIN_RS02385 are separated by 80 nucleotides ECOLIN_RS02385 and ECOLIN_RS02390 are separated by 124 nucleotides
ECOLIN_RS02375: ECOLIN_RS02375 - pyrimidine/purine nucleoside phosphorylase, at 482,970 to 483,254
_RS02375
ECOLIN_RS02380: ECOLIN_RS02380 - DUF2773 domain-containing protein, at 483,402 to 483,743
_RS02380
ECOLIN_RS31260: ECOLIN_RS31260 - hypothetical protein, at 483,740 to 483,820
_RS31260
ECOLIN_RS02385: ECOLIN_RS02385 - recombination-associated protein RdgC, at 483,901 to 484,812
_RS02385
ECOLIN_RS02390: ECOLIN_RS02390 - fructokinase, at 484,937 to 485,845
_RS02390
Position (kb) 483
484
485 Strain fitness (log2 ratio) -1
0
1
2 at 483.072 kb on + strand, within ECOLIN_RS02375 at 483.133 kb on + strand, within ECOLIN_RS02375 at 483.576 kb on - strand, within ECOLIN_RS02380 at 484.322 kb on - strand, within ECOLIN_RS02385 at 484.366 kb on - strand, within ECOLIN_RS02385 at 484.402 kb on - strand, within ECOLIN_RS02385 at 484.785 kb on - strand at 485.211 kb on + strand, within ECOLIN_RS02390 at 485.211 kb on + strand, within ECOLIN_RS02390 at 485.706 kb on + strand, within ECOLIN_RS02390 at 485.717 kb on + strand, within ECOLIN_RS02390
Per-strain Table
Position Strand Gene LocusTag Fraction Bas04 remove 483,072 + ECOLIN_RS02375 0.36 +0.2 483,133 + ECOLIN_RS02375 0.57 -0.4 483,576 - ECOLIN_RS02380 0.51 -0.2 484,322 - ECOLIN_RS02385 0.46 -0.5 484,366 - ECOLIN_RS02385 0.51 +1.2 484,402 - ECOLIN_RS02385 0.55 +2.2 484,785 - +0.0 485,211 + ECOLIN_RS02390 0.30 -0.7 485,211 + ECOLIN_RS02390 0.30 +0.3 485,706 + ECOLIN_RS02390 0.85 +1.2 485,717 + ECOLIN_RS02390 0.86 -0.3
Or see this region's nucleotide sequence