Experiment: MoYLS4 with Piperacillin 3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0614 and DVU0616 are separated by 179 nucleotides DVU0616 and DVU0617 overlap by 8 nucleotides DVU0617 and DVU0618 are separated by 29 nucleotides DVU0618 and DVU0619 are separated by 99 nucleotides
DVU0614: DVU0614 - hypothetical protein (TIGR), at 683,049 to 683,330
DVU0614
DVU0616: DVU0616 - hypothetical protein (TIGR), at 683,510 to 683,902
DVU0616
DVU0617: DVU0617 - hypothetical protein (TIGR), at 683,895 to 684,185
DVU0617
DVU0618: DVU0618 - hypothetical protein (TIGR), at 684,215 to 684,370
DVU0618
DVU0619: DVU0619 - sigma-54 dependent transcriptional regulator (TIGR), at 684,470 to 685,909
DVU0619
Position (kb) 683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 682.910 kb on + strand at 682.910 kb on + strand at 682.915 kb on + strand at 682.918 kb on - strand at 682.920 kb on + strand at 682.920 kb on + strand at 682.920 kb on + strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.975 kb on + strand at 683.004 kb on + strand at 683.004 kb on + strand at 683.011 kb on + strand at 683.060 kb on - strand at 683.089 kb on - strand, within DVU0614 at 683.123 kb on - strand, within DVU0614 at 683.158 kb on + strand, within DVU0614 at 683.170 kb on + strand, within DVU0614 at 683.220 kb on + strand, within DVU0614 at 683.262 kb on + strand, within DVU0614 at 683.285 kb on - strand, within DVU0614 at 683.297 kb on - strand, within DVU0614 at 683.303 kb on - strand at 683.313 kb on - strand at 683.365 kb on + strand at 683.375 kb on + strand at 683.428 kb on - strand at 683.530 kb on + strand at 683.538 kb on - strand at 683.642 kb on + strand, within DVU0616 at 683.708 kb on - strand, within DVU0616 at 683.782 kb on + strand, within DVU0616 at 683.810 kb on + strand, within DVU0616 at 683.826 kb on - strand, within DVU0616 at 683.837 kb on - strand, within DVU0616 at 683.864 kb on + strand at 683.872 kb on - strand at 683.931 kb on - strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.973 kb on - strand, within DVU0617 at 683.975 kb on + strand, within DVU0617 at 683.992 kb on - strand, within DVU0617 at 684.029 kb on + strand, within DVU0617 at 684.037 kb on - strand, within DVU0617 at 684.141 kb on + strand, within DVU0617 at 684.169 kb on + strand at 684.339 kb on + strand, within DVU0618 at 684.638 kb on + strand, within DVU0619 at 684.692 kb on + strand, within DVU0619 at 684.698 kb on - strand, within DVU0619 at 684.702 kb on + strand, within DVU0619 at 684.710 kb on - strand, within DVU0619 at 684.758 kb on - strand, within DVU0619 at 684.844 kb on + strand, within DVU0619 at 684.987 kb on - strand, within DVU0619 at 685.054 kb on + strand, within DVU0619 at 685.110 kb on + strand, within DVU0619
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Piperacillin 3 ug/mL remove 682,910 + -1.2 682,910 + -0.9 682,915 + -0.4 682,918 - -0.3 682,920 + -0.7 682,920 + -0.0 682,920 + -0.4 682,928 - -3.2 682,928 - -0.1 682,928 - -0.3 682,928 - -0.4 682,975 + -0.1 683,004 + -1.3 683,004 + +0.6 683,011 + +0.3 683,060 - -1.8 683,089 - DVU0614 0.14 +0.2 683,123 - DVU0614 0.26 -0.3 683,158 + DVU0614 0.39 -0.4 683,170 + DVU0614 0.43 -1.9 683,220 + DVU0614 0.61 +0.3 683,262 + DVU0614 0.76 -0.2 683,285 - DVU0614 0.84 -0.3 683,297 - DVU0614 0.88 -0.1 683,303 - +0.6 683,313 - -0.0 683,365 + -0.1 683,375 + -0.7 683,428 - +0.2 683,530 + -0.4 683,538 - -0.7 683,642 + DVU0616 0.34 -0.5 683,708 - DVU0616 0.50 -0.1 683,782 + DVU0616 0.69 -0.4 683,810 + DVU0616 0.76 +0.0 683,826 - DVU0616 0.80 -0.1 683,837 - DVU0616 0.83 +1.4 683,864 + +0.2 683,872 - +0.2 683,931 - DVU0617 0.12 -1.1 683,965 + DVU0617 0.24 -0.5 683,965 + DVU0617 0.24 +0.6 683,965 + DVU0617 0.24 +0.1 683,973 - DVU0617 0.27 +1.1 683,975 + DVU0617 0.27 -0.6 683,992 - DVU0617 0.33 +0.1 684,029 + DVU0617 0.46 -0.8 684,037 - DVU0617 0.49 +0.6 684,141 + DVU0617 0.85 -2.3 684,169 + +2.2 684,339 + DVU0618 0.79 -0.6 684,638 + DVU0619 0.12 -0.3 684,692 + DVU0619 0.15 +0.0 684,698 - DVU0619 0.16 -0.1 684,702 + DVU0619 0.16 -0.1 684,710 - DVU0619 0.17 -0.5 684,758 - DVU0619 0.20 -0.0 684,844 + DVU0619 0.26 +0.1 684,987 - DVU0619 0.36 -0.1 685,054 + DVU0619 0.41 +0.1 685,110 + DVU0619 0.44 -0.0
Or see this region's nucleotide sequence