Experiment: MoYLS4 with Piperacillin 3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cckA and cheYI are separated by 107 nucleotides cheYI and DVU0141 are separated by 329 nucleotides DVU0141 and trpS are separated by 28 nucleotides
DVU0139: cckA - sensor histidine kinase (TIGR), at 173,772 to 175,484
cckA
DVU0140: cheYI - response regulator (TIGR), at 175,592 to 176,005
cheYI
DVU0141: DVU0141 - peptidase, M50 family (TIGR), at 176,335 to 177,009
DVU0141
DVU0142: trpS - tryptophanyl-tRNA synthetase (TIGR), at 177,038 to 178,027
trpS
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 175.403 kb on + strand at 175.410 kb on + strand at 175.410 kb on + strand at 175.418 kb on - strand at 175.444 kb on + strand at 175.444 kb on + strand at 175.444 kb on + strand at 175.444 kb on + strand at 175.447 kb on - strand at 175.452 kb on - strand at 175.523 kb on + strand at 175.600 kb on + strand at 175.663 kb on + strand, within cheYI at 175.667 kb on + strand, within cheYI at 175.668 kb on - strand, within cheYI at 175.742 kb on - strand, within cheYI at 175.765 kb on - strand, within cheYI at 175.814 kb on - strand, within cheYI at 175.820 kb on + strand, within cheYI at 175.858 kb on - strand, within cheYI at 175.896 kb on - strand, within cheYI at 176.031 kb on + strand at 176.048 kb on + strand at 176.072 kb on - strand at 176.142 kb on - strand at 176.168 kb on - strand at 176.180 kb on + strand at 176.225 kb on - strand at 176.256 kb on - strand at 176.256 kb on - strand at 176.266 kb on - strand at 176.280 kb on - strand at 176.285 kb on - strand at 176.297 kb on + strand at 176.297 kb on + strand at 176.335 kb on + strand at 176.351 kb on + strand at 176.361 kb on + strand at 176.489 kb on + strand, within DVU0141 at 176.568 kb on + strand, within DVU0141 at 176.731 kb on - strand, within DVU0141 at 176.783 kb on + strand, within DVU0141 at 176.976 kb on + strand at 176.983 kb on + strand at 177.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Piperacillin 3 ug/mL remove 175,403 + -0.0 175,410 + +0.9 175,410 + -0.0 175,418 - -0.2 175,444 + -0.5 175,444 + +0.0 175,444 + -0.1 175,444 + -0.1 175,447 - +0.3 175,452 - -0.3 175,523 + +0.1 175,600 + -0.3 175,663 + cheYI DVU0140 0.17 -0.1 175,667 + cheYI DVU0140 0.18 +0.6 175,668 - cheYI DVU0140 0.18 -0.3 175,742 - cheYI DVU0140 0.36 -0.1 175,765 - cheYI DVU0140 0.42 +0.6 175,814 - cheYI DVU0140 0.54 -0.5 175,820 + cheYI DVU0140 0.55 -0.4 175,858 - cheYI DVU0140 0.64 -0.1 175,896 - cheYI DVU0140 0.73 -0.6 176,031 + -0.0 176,048 + +0.1 176,072 - -0.9 176,142 - -0.2 176,168 - -0.2 176,180 + -0.7 176,225 - -2.4 176,256 - -2.5 176,256 - -0.3 176,266 - +0.3 176,280 - -0.9 176,285 - -0.5 176,297 + -0.1 176,297 + -0.6 176,335 + +1.2 176,351 + -0.0 176,361 + +0.1 176,489 + DVU0141 0.23 -0.1 176,568 + DVU0141 0.35 -1.8 176,731 - DVU0141 0.59 -0.3 176,783 + DVU0141 0.66 +0.6 176,976 + -0.3 176,983 + -0.5 177,030 - +0.1
Or see this region's nucleotide sequence