Experiment: Bas04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23490 and ECOLIN_RS23495 are separated by 98 nucleotides ECOLIN_RS23495 and ECOLIN_RS23500 are separated by 428 nucleotides ECOLIN_RS23500 and ECOLIN_RS23505 are separated by 35 nucleotides ECOLIN_RS23505 and ECOLIN_RS23510 are separated by 85 nucleotides
ECOLIN_RS23490: ECOLIN_RS23490 - single-stranded DNA-binding protein SSB1, at 4,733,860 to 4,734,396
_RS23490
ECOLIN_RS23495: ECOLIN_RS23495 - YjcB family protein, at 4,734,495 to 4,734,776
_RS23495
ECOLIN_RS23500: ECOLIN_RS23500 - c-di-GMP phosphodiesterase PdeC, at 4,735,205 to 4,736,758
_RS23500
ECOLIN_RS23505: ECOLIN_RS23505 - superoxide response transcriptional regulator SoxS, at 4,736,794 to 4,737,117
_RS23505
ECOLIN_RS23510: ECOLIN_RS23510 - redox-sensitive transcriptional activator SoxR, at 4,737,203 to 4,737,667
_RS23510
Position (kb) 4735
4736
4737 Strain fitness (log2 ratio) -1
0
1
2 at 4734.419 kb on - strand at 4734.493 kb on + strand at 4734.493 kb on + strand at 4734.544 kb on - strand, within ECOLIN_RS23495 at 4734.670 kb on + strand, within ECOLIN_RS23495 at 4734.671 kb on - strand, within ECOLIN_RS23495 at 4734.671 kb on - strand, within ECOLIN_RS23495 at 4734.841 kb on + strand at 4734.914 kb on + strand at 4734.914 kb on + strand at 4734.974 kb on + strand at 4735.003 kb on + strand at 4735.004 kb on - strand at 4735.004 kb on - strand at 4735.004 kb on - strand at 4735.119 kb on + strand at 4735.119 kb on + strand at 4735.119 kb on + strand at 4735.138 kb on - strand at 4735.276 kb on + strand at 4735.277 kb on - strand at 4735.572 kb on - strand, within ECOLIN_RS23500 at 4735.595 kb on - strand, within ECOLIN_RS23500 at 4735.602 kb on - strand, within ECOLIN_RS23500 at 4735.602 kb on - strand, within ECOLIN_RS23500 at 4735.602 kb on - strand, within ECOLIN_RS23500 at 4735.733 kb on + strand, within ECOLIN_RS23500 at 4735.733 kb on + strand, within ECOLIN_RS23500 at 4735.734 kb on - strand, within ECOLIN_RS23500 at 4735.734 kb on - strand, within ECOLIN_RS23500 at 4735.734 kb on - strand, within ECOLIN_RS23500 at 4735.824 kb on + strand, within ECOLIN_RS23500 at 4735.843 kb on - strand, within ECOLIN_RS23500 at 4735.843 kb on - strand, within ECOLIN_RS23500 at 4735.843 kb on - strand, within ECOLIN_RS23500 at 4735.909 kb on + strand, within ECOLIN_RS23500 at 4735.934 kb on - strand, within ECOLIN_RS23500 at 4735.978 kb on - strand, within ECOLIN_RS23500 at 4736.066 kb on + strand, within ECOLIN_RS23500 at 4736.148 kb on + strand, within ECOLIN_RS23500 at 4736.148 kb on + strand, within ECOLIN_RS23500 at 4736.224 kb on + strand, within ECOLIN_RS23500 at 4736.506 kb on + strand, within ECOLIN_RS23500 at 4736.795 kb on + strand at 4737.088 kb on - strand at 4737.454 kb on + strand, within ECOLIN_RS23510 at 4737.454 kb on + strand, within ECOLIN_RS23510 at 4737.559 kb on + strand, within ECOLIN_RS23510 at 4737.559 kb on + strand, within ECOLIN_RS23510 at 4737.560 kb on - strand, within ECOLIN_RS23510 at 4737.560 kb on - strand, within ECOLIN_RS23510 at 4737.666 kb on - strand at 4737.687 kb on - strand at 4737.687 kb on - strand at 4737.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas04 remove 4,734,419 - -0.0 4,734,493 + +0.7 4,734,493 + -0.4 4,734,544 - ECOLIN_RS23495 0.17 +0.2 4,734,670 + ECOLIN_RS23495 0.62 -0.2 4,734,671 - ECOLIN_RS23495 0.62 -0.2 4,734,671 - ECOLIN_RS23495 0.62 +0.0 4,734,841 + -1.1 4,734,914 + -0.1 4,734,914 + -0.1 4,734,974 + +0.5 4,735,003 + -0.4 4,735,004 - +0.3 4,735,004 - +0.1 4,735,004 - +0.2 4,735,119 + -0.1 4,735,119 + -0.1 4,735,119 + -0.0 4,735,138 - -0.0 4,735,276 + +0.1 4,735,277 - -0.1 4,735,572 - ECOLIN_RS23500 0.24 +0.1 4,735,595 - ECOLIN_RS23500 0.25 -0.5 4,735,602 - ECOLIN_RS23500 0.26 -0.1 4,735,602 - ECOLIN_RS23500 0.26 +1.3 4,735,602 - ECOLIN_RS23500 0.26 +1.8 4,735,733 + ECOLIN_RS23500 0.34 -0.4 4,735,733 + ECOLIN_RS23500 0.34 -0.7 4,735,734 - ECOLIN_RS23500 0.34 -0.1 4,735,734 - ECOLIN_RS23500 0.34 -0.2 4,735,734 - ECOLIN_RS23500 0.34 -1.2 4,735,824 + ECOLIN_RS23500 0.40 +1.2 4,735,843 - ECOLIN_RS23500 0.41 -0.1 4,735,843 - ECOLIN_RS23500 0.41 -0.9 4,735,843 - ECOLIN_RS23500 0.41 +1.0 4,735,909 + ECOLIN_RS23500 0.45 +0.1 4,735,934 - ECOLIN_RS23500 0.47 -0.2 4,735,978 - ECOLIN_RS23500 0.50 +0.0 4,736,066 + ECOLIN_RS23500 0.55 +0.2 4,736,148 + ECOLIN_RS23500 0.61 +0.2 4,736,148 + ECOLIN_RS23500 0.61 +0.6 4,736,224 + ECOLIN_RS23500 0.66 +0.7 4,736,506 + ECOLIN_RS23500 0.84 +0.2 4,736,795 + +0.1 4,737,088 - +0.1 4,737,454 + ECOLIN_RS23510 0.54 +0.2 4,737,454 + ECOLIN_RS23510 0.54 +0.8 4,737,559 + ECOLIN_RS23510 0.77 +0.8 4,737,559 + ECOLIN_RS23510 0.77 +0.3 4,737,560 - ECOLIN_RS23510 0.77 +0.8 4,737,560 - ECOLIN_RS23510 0.77 +0.2 4,737,666 - -0.3 4,737,687 - +0.1 4,737,687 - -0.1 4,737,729 - +0.6
Or see this region's nucleotide sequence