Experiment: Bas04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20570 and ECOLIN_RS20575 overlap by 1 nucleotides ECOLIN_RS20575 and ECOLIN_RS20580 overlap by 4 nucleotides ECOLIN_RS20580 and ECOLIN_RS20585 are separated by 47 nucleotides ECOLIN_RS20585 and ECOLIN_RS20590 are separated by 54 nucleotides
ECOLIN_RS20570: ECOLIN_RS20570 - L-lactate permease, at 4,145,065 to 4,146,720
_RS20570
ECOLIN_RS20575: ECOLIN_RS20575 - transcriptional regulator LldR, at 4,146,720 to 4,147,496
_RS20575
ECOLIN_RS20580: ECOLIN_RS20580 - quinone-dependent L-lactate dehydrogenase, at 4,147,493 to 4,148,683
_RS20580
ECOLIN_RS20585: ECOLIN_RS20585 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 4,148,731 to 4,149,204
_RS20585
ECOLIN_RS20590: ECOLIN_RS20590 - serine O-acetyltransferase, at 4,149,259 to 4,150,080
_RS20590
Position (kb) 4147
4148
4149 Strain fitness (log2 ratio) -1
0
1 at 4146.701 kb on + strand at 4146.886 kb on + strand, within ECOLIN_RS20575 at 4147.197 kb on + strand, within ECOLIN_RS20575 at 4147.197 kb on - strand, within ECOLIN_RS20575 at 4147.197 kb on - strand, within ECOLIN_RS20575 at 4147.197 kb on - strand, within ECOLIN_RS20575 at 4147.498 kb on + strand at 4147.564 kb on + strand at 4147.565 kb on - strand at 4147.590 kb on - strand at 4147.665 kb on + strand, within ECOLIN_RS20580 at 4147.665 kb on + strand, within ECOLIN_RS20580 at 4147.666 kb on - strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.743 kb on - strand, within ECOLIN_RS20580 at 4147.743 kb on - strand, within ECOLIN_RS20580 at 4147.743 kb on - strand, within ECOLIN_RS20580 at 4147.877 kb on + strand, within ECOLIN_RS20580 at 4148.107 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.331 kb on + strand, within ECOLIN_RS20580 at 4148.341 kb on - strand, within ECOLIN_RS20580 at 4148.419 kb on - strand, within ECOLIN_RS20580 at 4148.443 kb on + strand, within ECOLIN_RS20580 at 4148.443 kb on + strand, within ECOLIN_RS20580 at 4148.528 kb on - strand, within ECOLIN_RS20580 at 4148.528 kb on - strand, within ECOLIN_RS20580 at 4148.696 kb on + strand at 4148.730 kb on + strand at 4148.730 kb on + strand at 4148.735 kb on + strand at 4148.735 kb on + strand at 4148.745 kb on - strand at 4148.772 kb on + strand at 4148.773 kb on - strand at 4148.976 kb on + strand, within ECOLIN_RS20585 at 4148.996 kb on + strand, within ECOLIN_RS20585 at 4149.154 kb on + strand, within ECOLIN_RS20585 at 4149.275 kb on + strand at 4149.286 kb on - strand at 4149.315 kb on + strand at 4149.559 kb on + strand, within ECOLIN_RS20590 at 4149.649 kb on + strand, within ECOLIN_RS20590 at 4149.649 kb on + strand, within ECOLIN_RS20590 at 4149.649 kb on + strand, within ECOLIN_RS20590 at 4149.649 kb on + strand, within ECOLIN_RS20590 at 4149.650 kb on - strand, within ECOLIN_RS20590 at 4149.650 kb on - strand, within ECOLIN_RS20590
Per-strain Table
Position Strand Gene LocusTag Fraction Bas04 remove 4,146,701 + -0.1 4,146,886 + ECOLIN_RS20575 0.21 -0.1 4,147,197 + ECOLIN_RS20575 0.61 -0.3 4,147,197 - ECOLIN_RS20575 0.61 +0.4 4,147,197 - ECOLIN_RS20575 0.61 +0.3 4,147,197 - ECOLIN_RS20575 0.61 +0.3 4,147,498 + +0.1 4,147,564 + +0.1 4,147,565 - -0.6 4,147,590 - +0.1 4,147,665 + ECOLIN_RS20580 0.14 +0.6 4,147,665 + ECOLIN_RS20580 0.14 -0.0 4,147,666 - ECOLIN_RS20580 0.15 +0.9 4,147,742 + ECOLIN_RS20580 0.21 -0.4 4,147,742 + ECOLIN_RS20580 0.21 +0.0 4,147,742 + ECOLIN_RS20580 0.21 +0.2 4,147,742 + ECOLIN_RS20580 0.21 -0.0 4,147,743 - ECOLIN_RS20580 0.21 +0.4 4,147,743 - ECOLIN_RS20580 0.21 -0.5 4,147,743 - ECOLIN_RS20580 0.21 -0.6 4,147,877 + ECOLIN_RS20580 0.32 +0.3 4,148,107 + ECOLIN_RS20580 0.52 +0.1 4,148,150 + ECOLIN_RS20580 0.55 +0.0 4,148,150 + ECOLIN_RS20580 0.55 +0.7 4,148,150 + ECOLIN_RS20580 0.55 +0.3 4,148,150 + ECOLIN_RS20580 0.55 +0.2 4,148,331 + ECOLIN_RS20580 0.70 +0.2 4,148,341 - ECOLIN_RS20580 0.71 -0.9 4,148,419 - ECOLIN_RS20580 0.78 +0.1 4,148,443 + ECOLIN_RS20580 0.80 +0.3 4,148,443 + ECOLIN_RS20580 0.80 +0.1 4,148,528 - ECOLIN_RS20580 0.87 -0.5 4,148,528 - ECOLIN_RS20580 0.87 +0.3 4,148,696 + +1.6 4,148,730 + +0.1 4,148,730 + -0.9 4,148,735 + +0.6 4,148,735 + +0.0 4,148,745 - -0.9 4,148,772 + -0.5 4,148,773 - +0.0 4,148,976 + ECOLIN_RS20585 0.52 -0.1 4,148,996 + ECOLIN_RS20585 0.56 +0.2 4,149,154 + ECOLIN_RS20585 0.89 +0.5 4,149,275 + +0.6 4,149,286 - +0.1 4,149,315 + -0.0 4,149,559 + ECOLIN_RS20590 0.36 -0.2 4,149,649 + ECOLIN_RS20590 0.47 -0.9 4,149,649 + ECOLIN_RS20590 0.47 -0.2 4,149,649 + ECOLIN_RS20590 0.47 +1.5 4,149,649 + ECOLIN_RS20590 0.47 -0.9 4,149,650 - ECOLIN_RS20590 0.48 -0.3 4,149,650 - ECOLIN_RS20590 0.48 -0.9
Or see this region's nucleotide sequence