Experiment: Bas04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS06865 and ECOLIN_RS06870 are separated by 317 nucleotides ECOLIN_RS06870 and ECOLIN_RS06875 overlap by 29 nucleotides ECOLIN_RS06875 and ECOLIN_RS06880 overlap by 17 nucleotides ECOLIN_RS06880 and ECOLIN_RS06885 overlap by 4 nucleotides
ECOLIN_RS06865: ECOLIN_RS06865 - terminase small subunit, at 1,350,271 to 1,350,537
_RS06865
ECOLIN_RS06870: ECOLIN_RS06870 - terminase small subunit, at 1,350,855 to 1,351,403
_RS06870
ECOLIN_RS06875: ECOLIN_RS06875 - phage terminase large subunit family protein, at 1,351,375 to 1,353,303
_RS06875
ECOLIN_RS06880: ECOLIN_RS06880 - phage head-stabilizing protein, at 1,353,287 to 1,353,493
_RS06880
ECOLIN_RS06885: ECOLIN_RS06885 - phage portal protein, at 1,353,490 to 1,355,082
_RS06885
Position (kb) 1351
1352
1353
1354 Strain fitness (log2 ratio) -1
0
1 at 1352.395 kb on + strand, within ECOLIN_RS06875 at 1352.602 kb on + strand, within ECOLIN_RS06875 at 1352.603 kb on - strand, within ECOLIN_RS06875 at 1353.154 kb on + strand at 1353.392 kb on - strand, within ECOLIN_RS06880 at 1353.732 kb on + strand, within ECOLIN_RS06885 at 1353.732 kb on + strand, within ECOLIN_RS06885
Per-strain Table
Position Strand Gene LocusTag Fraction Bas04 remove 1,352,395 + ECOLIN_RS06875 0.53 -0.4 1,352,602 + ECOLIN_RS06875 0.64 +0.2 1,352,603 - ECOLIN_RS06875 0.64 -0.2 1,353,154 + -0.1 1,353,392 - ECOLIN_RS06880 0.51 +0.5 1,353,732 + ECOLIN_RS06885 0.15 +0.2 1,353,732 + ECOLIN_RS06885 0.15 +1.0
Or see this region's nucleotide sequence