Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0080
Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Spectinomycin 0.025 mg/mL |
---|---|---|---|---|---|
remove | |||||
105,370 | + | -0.6 | |||
105,399 | + | +0.2 | |||
105,429 | + | +0.1 | |||
105,686 | - | cysC | DVUA0079 | 0.15 | -0.3 |
105,958 | + | cysC | DVUA0079 | 0.55 | -1.1 |
105,974 | - | cysC | DVUA0079 | 0.57 | -0.1 |
105,976 | + | cysC | DVUA0079 | 0.57 | -0.2 |
106,076 | - | cysC | DVUA0079 | 0.72 | +0.1 |
106,173 | + | cysC | DVUA0079 | 0.86 | -0.6 |
106,202 | + | -0.2 | |||
106,202 | + | -1.5 | |||
106,367 | + | -0.6 | |||
106,439 | + | -2.7 | |||
106,575 | + | DVUA0080 | 0.24 | -0.5 | |
106,593 | - | DVUA0080 | 0.26 | -1.9 | |
106,620 | - | DVUA0080 | 0.29 | -0.6 | |
106,622 | + | DVUA0080 | 0.29 | -0.9 | |
107,110 | + | DVUA0080 | 0.84 | -1.5 | |
107,334 | + | -1.3 | |||
107,342 | - | -0.4 | |||
107,362 | + | -0.9 | |||
107,448 | - | +0.1 | |||
107,736 | + | DVUA0081 | 0.23 | -0.2 | |
107,851 | + | DVUA0081 | 0.29 | +0.4 | |
108,049 | + | DVUA0081 | 0.38 | +0.8 |
Or see this region's nucleotide sequence