Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1704
Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Spectinomycin 0.025 mg/mL |
---|---|---|---|---|---|
remove | |||||
1,780,251 | - | DVU1703 | 0.76 | -0.1 | |
1,780,251 | - | DVU1703 | 0.76 | +0.4 | |
1,780,251 | - | DVU1703 | 0.76 | +0.0 | |
1,780,251 | - | DVU1703 | 0.76 | -0.5 | |
1,780,251 | - | DVU1703 | 0.76 | -0.1 | |
1,780,251 | - | DVU1703 | 0.76 | -1.7 | |
1,780,306 | + | DVU1703 | 0.78 | +0.1 | |
1,780,348 | + | DVU1703 | 0.79 | -0.9 | |
1,780,348 | + | DVU1703 | 0.79 | -0.8 | |
1,780,356 | - | DVU1703 | 0.80 | +0.6 | |
1,780,358 | + | DVU1703 | 0.80 | -0.5 | |
1,780,405 | + | DVU1703 | 0.81 | -0.1 | |
1,780,405 | + | DVU1703 | 0.81 | +0.0 | |
1,780,528 | + | DVU1703 | 0.85 | -0.0 | |
1,780,660 | - | DVU1703 | 0.89 | -0.3 | |
1,780,758 | + | +0.6 | |||
1,780,758 | + | +0.1 | |||
1,780,766 | - | -0.2 | |||
1,780,766 | - | -0.4 | |||
1,780,770 | + | -1.0 | |||
1,780,842 | - | +0.4 | |||
1,780,868 | - | -0.0 | |||
1,780,887 | - | +1.7 | |||
1,780,915 | + | -0.3 | |||
1,780,962 | + | -0.2 | |||
1,781,003 | - | -0.3 | |||
1,781,058 | - | -0.1 | |||
1,781,139 | - | +0.2 | |||
1,781,166 | - | +0.3 | |||
1,781,168 | + | -0.4 | |||
1,781,298 | - | DVU1704 | 0.40 | -0.7 | |
1,781,428 | + | +0.5 | |||
1,781,443 | - | +0.1 | |||
1,781,461 | + | -0.2 | |||
1,781,496 | - | -0.1 | |||
1,781,528 | - | -0.4 | |||
1,781,528 | - | +0.3 | |||
1,781,607 | - | DVU1705 | 0.12 | -0.3 | |
1,782,188 | - | DVU1705 | 0.58 | -1.0 |
Or see this region's nucleotide sequence