Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0526 and maF are separated by 100 nucleotides maF and pgpA overlap by 8 nucleotides pgpA and rrf2 are separated by 100 nucleotides
DVU0526: DVU0526 - drug resistance transporter, putative (TIGR), at 598,929 to 600,332
DVU0526
DVU0527: maF - septum formation protein Maf (TIGR), at 600,433 to 601,065
maF
DVU0528: pgpA - phosphatidylglycerophosphatase (TIGR), at 601,058 to 601,537
pgpA
DVU0529: rrf2 - Rrf2 protein (voordouw), at 601,638 to 602,090
rrf2
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1 at 599.447 kb on - strand, within DVU0526 at 599.528 kb on + strand, within DVU0526 at 599.535 kb on + strand, within DVU0526 at 599.566 kb on - strand, within DVU0526 at 599.656 kb on - strand, within DVU0526 at 599.717 kb on + strand, within DVU0526 at 599.764 kb on + strand, within DVU0526 at 599.807 kb on + strand, within DVU0526 at 599.807 kb on + strand, within DVU0526 at 599.807 kb on + strand, within DVU0526 at 599.815 kb on - strand, within DVU0526 at 599.815 kb on - strand, within DVU0526 at 599.817 kb on + strand, within DVU0526 at 599.865 kb on - strand, within DVU0526 at 599.950 kb on - strand, within DVU0526 at 600.021 kb on + strand, within DVU0526 at 600.062 kb on + strand, within DVU0526 at 600.067 kb on + strand, within DVU0526 at 600.133 kb on - strand, within DVU0526 at 600.146 kb on + strand, within DVU0526 at 600.156 kb on - strand, within DVU0526 at 600.199 kb on - strand at 600.222 kb on - strand at 600.245 kb on + strand at 600.256 kb on + strand at 600.321 kb on + strand at 600.326 kb on + strand at 600.406 kb on + strand at 600.406 kb on + strand at 600.406 kb on + strand at 600.408 kb on + strand at 600.443 kb on - strand at 600.448 kb on - strand at 600.462 kb on + strand at 600.519 kb on + strand, within maF at 600.539 kb on - strand, within maF at 600.566 kb on + strand, within maF at 600.623 kb on - strand, within maF at 600.642 kb on + strand, within maF at 600.648 kb on - strand, within maF at 600.677 kb on - strand, within maF at 600.692 kb on + strand, within maF at 600.726 kb on + strand, within maF at 600.775 kb on + strand, within maF at 600.822 kb on - strand, within maF at 600.932 kb on - strand, within maF at 601.521 kb on + strand at 601.580 kb on - strand at 601.629 kb on + strand at 601.636 kb on + strand at 601.776 kb on + strand, within rrf2 at 601.791 kb on - strand, within rrf2 at 601.851 kb on + strand, within rrf2 at 601.872 kb on + strand, within rrf2 at 601.872 kb on + strand, within rrf2 at 601.936 kb on + strand, within rrf2 at 602.011 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 599,447 - DVU0526 0.37 -0.6 599,528 + DVU0526 0.43 -0.9 599,535 + DVU0526 0.43 -1.1 599,566 - DVU0526 0.45 -0.4 599,656 - DVU0526 0.52 -0.2 599,717 + DVU0526 0.56 -0.3 599,764 + DVU0526 0.59 -0.4 599,807 + DVU0526 0.63 +0.3 599,807 + DVU0526 0.63 -0.8 599,807 + DVU0526 0.63 +0.8 599,815 - DVU0526 0.63 -0.1 599,815 - DVU0526 0.63 -0.8 599,817 + DVU0526 0.63 +0.4 599,865 - DVU0526 0.67 +0.0 599,950 - DVU0526 0.73 -0.2 600,021 + DVU0526 0.78 -0.7 600,062 + DVU0526 0.81 +0.2 600,067 + DVU0526 0.81 -0.8 600,133 - DVU0526 0.86 -0.1 600,146 + DVU0526 0.87 -0.5 600,156 - DVU0526 0.87 -0.2 600,199 - +0.9 600,222 - -0.8 600,245 + -0.5 600,256 + +0.4 600,321 + -2.1 600,326 + -1.3 600,406 + +1.1 600,406 + -0.5 600,406 + -0.7 600,408 + -0.3 600,443 - +0.4 600,448 - -0.0 600,462 + -0.2 600,519 + maF DVU0527 0.14 +0.1 600,539 - maF DVU0527 0.17 +0.7 600,566 + maF DVU0527 0.21 +0.1 600,623 - maF DVU0527 0.30 +0.0 600,642 + maF DVU0527 0.33 +0.4 600,648 - maF DVU0527 0.34 -0.1 600,677 - maF DVU0527 0.39 -0.9 600,692 + maF DVU0527 0.41 +0.3 600,726 + maF DVU0527 0.46 -0.3 600,775 + maF DVU0527 0.54 +1.1 600,822 - maF DVU0527 0.61 -1.6 600,932 - maF DVU0527 0.79 +0.6 601,521 + -0.3 601,580 - -0.3 601,629 + +1.5 601,636 + -1.2 601,776 + rrf2 DVU0529 0.30 -0.5 601,791 - rrf2 DVU0529 0.34 -0.7 601,851 + rrf2 DVU0529 0.47 -0.6 601,872 + rrf2 DVU0529 0.52 +0.0 601,872 + rrf2 DVU0529 0.52 -0.2 601,936 + rrf2 DVU0529 0.66 -0.4 602,011 + rrf2 DVU0529 0.82 -0.8 602,021 + rrf2 DVU0529 0.85 -0.3 602,021 + rrf2 DVU0529 0.85 +0.6 602,021 + rrf2 DVU0529 0.85 -2.6
Or see this region's nucleotide sequence