Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0446 and DVU0447 overlap by 8 nucleotides DVU0447 and gmd are separated by 393 nucleotides
DVU0446: DVU0446 - sodium/solute symporter family protein (TIGR), at 506,042 to 507,589
DVU0446
DVU0447: DVU0447 - membrane protein, putative (TIGR), at 507,582 to 507,899
DVU0447
DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438
gmd
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 506.693 kb on + strand, within DVU0446 at 506.736 kb on - strand, within DVU0446 at 506.796 kb on + strand, within DVU0446 at 506.804 kb on - strand, within DVU0446 at 506.804 kb on - strand, within DVU0446 at 506.804 kb on - strand, within DVU0446 at 506.848 kb on - strand, within DVU0446 at 506.887 kb on - strand, within DVU0446 at 507.205 kb on - strand, within DVU0446 at 507.209 kb on + strand, within DVU0446 at 507.237 kb on - strand, within DVU0446 at 507.330 kb on + strand, within DVU0446 at 507.415 kb on + strand, within DVU0446 at 507.446 kb on + strand at 507.451 kb on - strand at 507.477 kb on + strand at 507.535 kb on - strand at 507.560 kb on - strand at 507.560 kb on - strand at 507.562 kb on + strand at 507.562 kb on + strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.607 kb on - strand at 507.685 kb on + strand, within DVU0447 at 507.719 kb on + strand, within DVU0447 at 507.782 kb on + strand, within DVU0447 at 507.800 kb on + strand, within DVU0447 at 507.811 kb on + strand, within DVU0447 at 507.819 kb on - strand, within DVU0447 at 507.863 kb on - strand, within DVU0447 at 507.898 kb on - strand at 507.907 kb on + strand at 507.915 kb on - strand at 507.917 kb on - strand at 507.998 kb on - strand at 507.998 kb on - strand at 508.016 kb on + strand at 508.024 kb on - strand at 508.024 kb on - strand at 508.048 kb on - strand at 508.053 kb on - strand at 508.080 kb on + strand at 508.088 kb on - strand at 508.374 kb on - strand at 508.536 kb on + strand, within gmd at 508.544 kb on - strand, within gmd at 508.651 kb on + strand, within gmd at 508.826 kb on - strand, within gmd at 508.866 kb on + strand, within gmd
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 506,693 + DVU0446 0.42 -0.7 506,736 - DVU0446 0.45 -0.6 506,796 + DVU0446 0.49 -0.2 506,804 - DVU0446 0.49 +0.6 506,804 - DVU0446 0.49 -2.7 506,804 - DVU0446 0.49 +0.3 506,848 - DVU0446 0.52 -1.1 506,887 - DVU0446 0.55 +0.3 507,205 - DVU0446 0.75 +0.8 507,209 + DVU0446 0.75 +0.3 507,237 - DVU0446 0.77 -0.2 507,330 + DVU0446 0.83 -2.3 507,415 + DVU0446 0.89 -0.4 507,446 + -0.0 507,451 - +0.2 507,477 + +1.1 507,535 - -1.2 507,560 - +0.9 507,560 - -0.8 507,562 + -1.3 507,562 + -0.2 507,570 - -1.8 507,570 - -0.0 507,570 - -0.1 507,607 - -0.0 507,685 + DVU0447 0.32 -0.5 507,719 + DVU0447 0.43 -3.1 507,782 + DVU0447 0.63 -1.5 507,800 + DVU0447 0.69 -1.4 507,811 + DVU0447 0.72 +0.1 507,819 - DVU0447 0.75 -1.0 507,863 - DVU0447 0.88 -0.3 507,898 - -0.0 507,907 + +0.0 507,915 - -0.7 507,917 - +0.2 507,998 - -0.0 507,998 - -0.4 508,016 + -0.5 508,024 - -0.5 508,024 - -0.1 508,048 - -0.2 508,053 - +0.9 508,080 + -0.2 508,088 - -0.2 508,374 - +0.8 508,536 + gmd DVU0448 0.21 +0.8 508,544 - gmd DVU0448 0.22 -0.5 508,651 + gmd DVU0448 0.31 +0.3 508,826 - gmd DVU0448 0.47 -0.6 508,866 + gmd DVU0448 0.50 -1.6
Or see this region's nucleotide sequence