Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0408 and DVU0409 are separated by 222 nucleotides DVU0409 and DVU0410 are separated by 5 nucleotides DVU0410 and DVU0411 are separated by 161 nucleotides
DVU0408: DVU0408 - response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR), at 456,505 to 458,652
DVU0408
DVU0409: DVU0409 - hypothetical protein (TIGR), at 458,875 to 459,225
DVU0409
DVU0410: DVU0410 - hypothetical protein (TIGR), at 459,231 to 459,836
DVU0410
DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671
DVU0411
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 457.934 kb on - strand, within DVU0408 at 457.962 kb on + strand, within DVU0408 at 457.962 kb on + strand, within DVU0408 at 457.970 kb on - strand, within DVU0408 at 458.196 kb on + strand, within DVU0408 at 458.237 kb on + strand, within DVU0408 at 458.252 kb on + strand, within DVU0408 at 458.316 kb on + strand, within DVU0408 at 458.381 kb on + strand, within DVU0408 at 458.383 kb on + strand, within DVU0408 at 458.441 kb on - strand at 458.567 kb on + strand at 458.575 kb on - strand at 458.713 kb on + strand at 458.779 kb on - strand at 458.792 kb on + strand at 458.792 kb on + strand at 458.839 kb on + strand at 458.886 kb on + strand at 458.894 kb on - strand at 458.906 kb on + strand at 458.914 kb on - strand, within DVU0409 at 458.994 kb on - strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.202 kb on - strand at 459.448 kb on + strand, within DVU0410 at 459.448 kb on + strand, within DVU0410 at 459.482 kb on - strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.562 kb on + strand, within DVU0410 at 459.577 kb on + strand, within DVU0410 at 459.580 kb on - strand, within DVU0410 at 459.585 kb on - strand, within DVU0410 at 459.658 kb on + strand, within DVU0410 at 459.665 kb on - strand, within DVU0410 at 459.685 kb on - strand, within DVU0410 at 459.688 kb on + strand, within DVU0410 at 459.727 kb on - strand, within DVU0410 at 459.737 kb on + strand, within DVU0410 at 459.934 kb on + strand at 460.029 kb on - strand at 460.118 kb on - strand at 460.133 kb on + strand at 460.136 kb on - strand at 460.154 kb on - strand at 460.176 kb on - strand, within DVU0411
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 457,934 - DVU0408 0.67 -0.3 457,962 + DVU0408 0.68 -0.1 457,962 + DVU0408 0.68 +0.2 457,970 - DVU0408 0.68 -0.9 458,196 + DVU0408 0.79 +0.1 458,237 + DVU0408 0.81 +0.5 458,252 + DVU0408 0.81 -0.2 458,316 + DVU0408 0.84 +0.2 458,381 + DVU0408 0.87 +0.7 458,383 + DVU0408 0.87 -0.2 458,441 - -1.5 458,567 + -0.1 458,575 - +0.9 458,713 + -0.1 458,779 - -0.1 458,792 + +0.2 458,792 + +0.5 458,839 + -0.1 458,886 + +0.9 458,894 - +0.1 458,906 + +0.5 458,914 - DVU0409 0.11 -1.5 458,994 - DVU0409 0.34 -0.0 459,177 + DVU0409 0.86 +0.1 459,177 + DVU0409 0.86 -2.1 459,202 - -0.5 459,448 + DVU0410 0.36 +0.1 459,448 + DVU0410 0.36 +0.6 459,482 - DVU0410 0.41 -0.1 459,500 + DVU0410 0.44 +0.5 459,500 + DVU0410 0.44 +0.7 459,500 + DVU0410 0.44 -0.0 459,562 + DVU0410 0.55 +0.0 459,577 + DVU0410 0.57 -0.1 459,580 - DVU0410 0.58 +0.4 459,585 - DVU0410 0.58 +0.7 459,658 + DVU0410 0.70 -0.1 459,665 - DVU0410 0.72 +2.3 459,685 - DVU0410 0.75 -0.2 459,688 + DVU0410 0.75 -0.3 459,727 - DVU0410 0.82 -0.2 459,737 + DVU0410 0.83 +0.1 459,934 + -0.5 460,029 - -0.1 460,118 - +1.2 460,133 + -0.3 460,136 - +0.3 460,154 - +1.1 460,176 - DVU0411 0.11 +0.9
Or see this region's nucleotide sequence