Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0361

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntilvB-1 and ilvH are separated by 4 nucleotidesilvH and DVU0362 are separated by 50 nucleotidesDVU0362 and pabB overlap by 4 nucleotides DVU0360: ilvB-1 - acetolactate synthase, large subunit, biosynthetic type (TIGR), at 409,391 to 411,082 ilvB-1 DVU0361: ilvH - acetolactate synthase III, small subunit, putative (TIGR), at 411,087 to 411,410 ilvH DVU0362: DVU0362 - conserved hypothetical protein (TIGR), at 411,461 to 412,240 DVU0362 DVU0363: pabB - para-aminobenzoate synthase, component I (TIGR), at 412,237 to 413,241 pabB Position (kb) 411 412Strain fitness (log2 ratio) -1 0 1at 410.091 kb on - strand, within ilvB-1at 410.152 kb on + strand, within ilvB-1at 410.203 kb on + strand, within ilvB-1at 410.257 kb on + strand, within ilvB-1at 410.281 kb on - strand, within ilvB-1at 410.289 kb on + strand, within ilvB-1at 410.297 kb on - strand, within ilvB-1at 410.407 kb on + strand, within ilvB-1at 410.412 kb on + strand, within ilvB-1at 410.451 kb on + strand, within ilvB-1at 410.459 kb on - strand, within ilvB-1at 410.459 kb on - strand, within ilvB-1at 410.459 kb on - strand, within ilvB-1at 410.485 kb on - strand, within ilvB-1at 410.549 kb on + strand, within ilvB-1at 410.564 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.572 kb on - strand, within ilvB-1at 410.572 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.612 kb on - strand, within ilvB-1at 410.657 kb on + strand, within ilvB-1at 410.666 kb on + strand, within ilvB-1at 410.670 kb on - strand, within ilvB-1at 410.670 kb on - strand, within ilvB-1at 410.682 kb on - strand, within ilvB-1at 410.786 kb on + strand, within ilvB-1at 410.787 kb on + strand, within ilvB-1at 410.787 kb on - strand, within ilvB-1at 410.793 kb on + strand, within ilvB-1at 410.801 kb on - strand, within ilvB-1at 410.966 kb on - strandat 410.972 kb on - strandat 411.012 kb on - strandat 411.094 kb on + strandat 411.097 kb on - strandat 411.175 kb on - strand, within ilvHat 411.373 kb on + strand, within ilvHat 411.389 kb on - strandat 411.409 kb on + strandat 411.532 kb on - strandat 411.565 kb on - strand, within DVU0362at 411.626 kb on - strand, within DVU0362at 411.626 kb on - strand, within DVU0362at 411.631 kb on - strand, within DVU0362at 411.642 kb on + strand, within DVU0362at 411.649 kb on - strand, within DVU0362at 411.683 kb on - strand, within DVU0362at 411.708 kb on - strand, within DVU0362at 411.727 kb on - strand, within DVU0362at 411.915 kb on + strand, within DVU0362at 411.938 kb on + strand, within DVU0362at 411.996 kb on - strand, within DVU0362at 412.062 kb on - strand, within DVU0362at 412.093 kb on - strand, within DVU0362at 412.134 kb on + strand, within DVU0362at 412.146 kb on + strand, within DVU0362at 412.344 kb on + strand, within pabBat 412.360 kb on + strand, within pabBat 412.360 kb on + strand, within pabBat 412.368 kb on - strand, within pabBat 412.368 kb on - strand, within pabB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
remove
410,091 - ilvB-1 DVU0360 0.41 -0.1
410,152 + ilvB-1 DVU0360 0.45 +0.3
410,203 + ilvB-1 DVU0360 0.48 +0.2
410,257 + ilvB-1 DVU0360 0.51 -0.1
410,281 - ilvB-1 DVU0360 0.53 +0.0
410,289 + ilvB-1 DVU0360 0.53 +0.1
410,297 - ilvB-1 DVU0360 0.54 -0.2
410,407 + ilvB-1 DVU0360 0.60 +0.0
410,412 + ilvB-1 DVU0360 0.60 -0.5
410,451 + ilvB-1 DVU0360 0.63 +0.1
410,459 - ilvB-1 DVU0360 0.63 +0.1
410,459 - ilvB-1 DVU0360 0.63 -1.4
410,459 - ilvB-1 DVU0360 0.63 +0.0
410,485 - ilvB-1 DVU0360 0.65 +0.2
410,549 + ilvB-1 DVU0360 0.68 +0.3
410,564 + ilvB-1 DVU0360 0.69 -0.1
410,569 + ilvB-1 DVU0360 0.70 -0.4
410,569 + ilvB-1 DVU0360 0.70 -1.4
410,569 + ilvB-1 DVU0360 0.70 -0.6
410,569 + ilvB-1 DVU0360 0.70 -0.2
410,569 + ilvB-1 DVU0360 0.70 +0.1
410,569 + ilvB-1 DVU0360 0.70 -0.6
410,569 + ilvB-1 DVU0360 0.70 -0.1
410,569 + ilvB-1 DVU0360 0.70 -0.5
410,569 + ilvB-1 DVU0360 0.70 -0.8
410,569 + ilvB-1 DVU0360 0.70 +1.1
410,569 + ilvB-1 DVU0360 0.70 -0.4
410,569 + ilvB-1 DVU0360 0.70 -0.0
410,569 + ilvB-1 DVU0360 0.70 +1.3
410,569 + ilvB-1 DVU0360 0.70 +0.0
410,572 - ilvB-1 DVU0360 0.70 -0.7
410,572 - ilvB-1 DVU0360 0.70 -0.6
410,577 - ilvB-1 DVU0360 0.70 +0.1
410,577 - ilvB-1 DVU0360 0.70 -1.2
410,577 - ilvB-1 DVU0360 0.70 +0.1
410,577 - ilvB-1 DVU0360 0.70 +1.3
410,577 - ilvB-1 DVU0360 0.70 +0.1
410,577 - ilvB-1 DVU0360 0.70 +0.3
410,577 - ilvB-1 DVU0360 0.70 -0.5
410,577 - ilvB-1 DVU0360 0.70 -0.7
410,577 - ilvB-1 DVU0360 0.70 -0.9
410,577 - ilvB-1 DVU0360 0.70 +0.3
410,577 - ilvB-1 DVU0360 0.70 -0.4
410,577 - ilvB-1 DVU0360 0.70 +0.3
410,577 - ilvB-1 DVU0360 0.70 +0.1
410,577 - ilvB-1 DVU0360 0.70 +0.1
410,612 - ilvB-1 DVU0360 0.72 +0.9
410,657 + ilvB-1 DVU0360 0.75 -0.4
410,666 + ilvB-1 DVU0360 0.75 +0.5
410,670 - ilvB-1 DVU0360 0.76 -0.6
410,670 - ilvB-1 DVU0360 0.76 +0.1
410,682 - ilvB-1 DVU0360 0.76 -0.3
410,786 + ilvB-1 DVU0360 0.82 +0.4
410,787 + ilvB-1 DVU0360 0.83 -0.2
410,787 - ilvB-1 DVU0360 0.83 +0.5
410,793 + ilvB-1 DVU0360 0.83 +0.2
410,801 - ilvB-1 DVU0360 0.83 -0.2
410,966 - -0.5
410,972 - -0.3
411,012 - -0.6
411,094 + -0.5
411,097 - +0.1
411,175 - ilvH DVU0361 0.27 -0.6
411,373 + ilvH DVU0361 0.88 -0.7
411,389 - -0.2
411,409 + +0.8
411,532 - -0.9
411,565 - DVU0362 0.13 -1.4
411,626 - DVU0362 0.21 -0.8
411,626 - DVU0362 0.21 -0.3
411,631 - DVU0362 0.22 -0.1
411,642 + DVU0362 0.23 +0.4
411,649 - DVU0362 0.24 +0.2
411,683 - DVU0362 0.28 +0.5
411,708 - DVU0362 0.32 +0.2
411,727 - DVU0362 0.34 +0.0
411,915 + DVU0362 0.58 +0.1
411,938 + DVU0362 0.61 +0.9
411,996 - DVU0362 0.69 -0.8
412,062 - DVU0362 0.77 -0.2
412,093 - DVU0362 0.81 -0.1
412,134 + DVU0362 0.86 -0.1
412,146 + DVU0362 0.88 -0.1
412,344 + pabB DVU0363 0.11 -0.7
412,360 + pabB DVU0363 0.12 +0.3
412,360 + pabB DVU0363 0.12 -0.4
412,368 - pabB DVU0363 0.13 -0.4
412,368 - pabB DVU0363 0.13 -0.7

Or see this region's nucleotide sequence