Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0214

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0213 and DVU0214 are separated by 8 nucleotidesDVU0214 and DVU0215 are separated by 122 nucleotides DVU0213: DVU0213 - conserved domain protein (TIGR), at 252,969 to 254,459 DVU0213 DVU0214: DVU0214 - tail/DNA circulation protein, putative (TIGR), at 254,468 to 255,667 DVU0214 DVU0215: DVU0215 - tail protein, putative (TIGR), at 255,790 to 256,923 DVU0215 Position (kb) 254 255 256Strain fitness (log2 ratio) -2 -1 0 1at 253.473 kb on + strand, within DVU0213at 253.577 kb on - strand, within DVU0213at 253.623 kb on + strand, within DVU0213at 253.674 kb on + strand, within DVU0213at 253.683 kb on - strand, within DVU0213at 253.754 kb on + strand, within DVU0213at 253.754 kb on + strand, within DVU0213at 253.754 kb on + strand, within DVU0213at 253.769 kb on + strand, within DVU0213at 253.803 kb on - strand, within DVU0213at 254.203 kb on - strand, within DVU0213at 254.218 kb on - strand, within DVU0213at 255.244 kb on + strand, within DVU0214at 255.249 kb on + strand, within DVU0214at 255.268 kb on - strand, within DVU0214at 255.563 kb on - strandat 255.932 kb on - strand, within DVU0215at 256.100 kb on + strand, within DVU0215at 256.105 kb on + strand, within DVU0215at 256.167 kb on - strand, within DVU0215at 256.173 kb on - strand, within DVU0215at 256.180 kb on - strand, within DVU0215at 256.287 kb on + strand, within DVU0215at 256.337 kb on + strand, within DVU0215at 256.376 kb on - strand, within DVU0215

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
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253,473 + DVU0213 0.34 +0.1
253,577 - DVU0213 0.41 -0.7
253,623 + DVU0213 0.44 -0.4
253,674 + DVU0213 0.47 +0.6
253,683 - DVU0213 0.48 +0.0
253,754 + DVU0213 0.53 +0.1
253,754 + DVU0213 0.53 -0.2
253,754 + DVU0213 0.53 -0.1
253,769 + DVU0213 0.54 -2.0
253,803 - DVU0213 0.56 -0.6
254,203 - DVU0213 0.83 -0.8
254,218 - DVU0213 0.84 -0.4
255,244 + DVU0214 0.65 -1.0
255,249 + DVU0214 0.65 -0.9
255,268 - DVU0214 0.67 -0.4
255,563 - +0.0
255,932 - DVU0215 0.13 +0.6
256,100 + DVU0215 0.27 +0.1
256,105 + DVU0215 0.28 -0.1
256,167 - DVU0215 0.33 -0.4
256,173 - DVU0215 0.34 +0.8
256,180 - DVU0215 0.34 -0.1
256,287 + DVU0215 0.44 -0.1
256,337 + DVU0215 0.48 -0.2
256,376 - DVU0215 0.52 +0.5

Or see this region's nucleotide sequence