Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0061 and DVU0062 overlap by 4 nucleotides DVU0062 and DVU0063 are separated by 29 nucleotides DVU0063 and DVU0064 are separated by 88 nucleotides
DVU0061: DVU0061 - multidrug resistance protein, putative (TIGR), at 70,740 to 73,880
DVU0061
DVU0062: DVU0062 - RND efflux system, outer membrane protein, NodT family (TIGR), at 73,877 to 75,391
DVU0062
DVU0063: DVU0063 - transcriptional regulator, MarR family (TIGR), at 75,421 to 75,861
DVU0063
DVU0064: DVU0064 - hypothetical protein (TIGR), at 75,950 to 76,858
DVU0064
Position (kb) 73
74
75
76 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 72.913 kb on - strand, within DVU0061 at 72.935 kb on - strand, within DVU0061 at 72.978 kb on - strand, within DVU0061 at 73.000 kb on + strand, within DVU0061 at 73.100 kb on - strand, within DVU0061 at 73.138 kb on - strand, within DVU0061 at 73.144 kb on + strand, within DVU0061 at 73.154 kb on + strand, within DVU0061 at 73.205 kb on + strand, within DVU0061 at 73.234 kb on + strand, within DVU0061 at 73.242 kb on - strand, within DVU0061 at 73.242 kb on - strand, within DVU0061 at 73.321 kb on + strand, within DVU0061 at 73.356 kb on + strand, within DVU0061 at 73.364 kb on - strand, within DVU0061 at 73.439 kb on - strand, within DVU0061 at 73.457 kb on + strand, within DVU0061 at 73.465 kb on - strand, within DVU0061 at 73.482 kb on - strand, within DVU0061 at 73.522 kb on - strand, within DVU0061 at 73.595 kb on + strand at 73.682 kb on - strand at 73.710 kb on - strand at 73.821 kb on - strand at 73.843 kb on + strand at 73.898 kb on + strand at 73.967 kb on - strand at 73.967 kb on - strand at 74.035 kb on + strand, within DVU0062 at 74.043 kb on - strand, within DVU0062 at 74.051 kb on + strand, within DVU0062 at 74.066 kb on - strand, within DVU0062 at 74.110 kb on - strand, within DVU0062 at 74.179 kb on + strand, within DVU0062 at 74.187 kb on - strand, within DVU0062 at 74.254 kb on + strand, within DVU0062 at 74.267 kb on + strand, within DVU0062 at 74.354 kb on + strand, within DVU0062 at 74.452 kb on - strand, within DVU0062 at 74.486 kb on - strand, within DVU0062 at 74.519 kb on - strand, within DVU0062 at 74.540 kb on + strand, within DVU0062 at 74.561 kb on - strand, within DVU0062 at 74.561 kb on - strand, within DVU0062 at 74.747 kb on - strand, within DVU0062 at 74.861 kb on - strand, within DVU0062 at 74.861 kb on - strand, within DVU0062 at 74.866 kb on - strand, within DVU0062 at 74.898 kb on - strand, within DVU0062 at 74.994 kb on + strand, within DVU0062 at 75.365 kb on - strand at 75.365 kb on - strand at 75.385 kb on + strand at 75.544 kb on - strand, within DVU0063 at 75.594 kb on + strand, within DVU0063 at 75.602 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.711 kb on + strand, within DVU0063 at 75.811 kb on + strand, within DVU0063 at 75.827 kb on + strand at 75.833 kb on - strand at 75.861 kb on + strand at 75.939 kb on - strand at 75.953 kb on - strand at 76.051 kb on + strand, within DVU0064 at 76.210 kb on + strand, within DVU0064 at 76.269 kb on - strand, within DVU0064 at 76.271 kb on + strand, within DVU0064 at 76.313 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.366 kb on + strand, within DVU0064 at 76.381 kb on + strand, within DVU0064 at 76.388 kb on + strand, within DVU0064
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 72,913 - DVU0061 0.69 -0.5 72,935 - DVU0061 0.70 -0.8 72,978 - DVU0061 0.71 -1.2 73,000 + DVU0061 0.72 -1.6 73,100 - DVU0061 0.75 -0.9 73,138 - DVU0061 0.76 -0.3 73,144 + DVU0061 0.77 -0.1 73,154 + DVU0061 0.77 -1.3 73,205 + DVU0061 0.78 -1.5 73,234 + DVU0061 0.79 -1.0 73,242 - DVU0061 0.80 -3.8 73,242 - DVU0061 0.80 -0.2 73,321 + DVU0061 0.82 -1.6 73,356 + DVU0061 0.83 -0.5 73,364 - DVU0061 0.84 -1.2 73,439 - DVU0061 0.86 -1.2 73,457 + DVU0061 0.87 -0.7 73,465 - DVU0061 0.87 +0.0 73,482 - DVU0061 0.87 -1.7 73,522 - DVU0061 0.89 +0.1 73,595 + -0.2 73,682 - -0.9 73,710 - -0.6 73,821 - +1.2 73,843 + +0.2 73,898 + -1.2 73,967 - -0.8 73,967 - -0.5 74,035 + DVU0062 0.10 -1.4 74,043 - DVU0062 0.11 -2.3 74,051 + DVU0062 0.11 -0.6 74,066 - DVU0062 0.12 -1.2 74,110 - DVU0062 0.15 -1.2 74,179 + DVU0062 0.20 +1.8 74,187 - DVU0062 0.20 -0.5 74,254 + DVU0062 0.25 -0.4 74,267 + DVU0062 0.26 +2.2 74,354 + DVU0062 0.31 -1.8 74,452 - DVU0062 0.38 +0.4 74,486 - DVU0062 0.40 -2.6 74,519 - DVU0062 0.42 -1.6 74,540 + DVU0062 0.44 -0.7 74,561 - DVU0062 0.45 -0.0 74,561 - DVU0062 0.45 -0.5 74,747 - DVU0062 0.57 -0.6 74,861 - DVU0062 0.65 +0.7 74,861 - DVU0062 0.65 -1.3 74,866 - DVU0062 0.65 +0.2 74,898 - DVU0062 0.67 -1.6 74,994 + DVU0062 0.74 -0.5 75,365 - +0.1 75,365 - +0.3 75,385 + -0.4 75,544 - DVU0063 0.28 +0.6 75,594 + DVU0063 0.39 +0.6 75,602 - DVU0063 0.41 -0.5 75,604 - DVU0063 0.41 -0.9 75,604 - DVU0063 0.41 +0.0 75,711 + DVU0063 0.66 -0.1 75,811 + DVU0063 0.88 +0.6 75,827 + -0.2 75,833 - +0.7 75,861 + +0.3 75,939 - -1.3 75,953 - +0.2 76,051 + DVU0064 0.11 -0.2 76,210 + DVU0064 0.29 +1.0 76,269 - DVU0064 0.35 +1.1 76,271 + DVU0064 0.35 -0.2 76,313 + DVU0064 0.40 -0.1 76,320 + DVU0064 0.41 +1.7 76,320 + DVU0064 0.41 -0.9 76,366 + DVU0064 0.46 -1.0 76,381 + DVU0064 0.47 -0.6 76,388 + DVU0064 0.48 +0.3
Or see this region's nucleotide sequence