Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0057

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcheV-1 and DVU0057 are separated by 259 nucleotidesDVU0057 and DVU0058 overlap by 4 nucleotides DVU0056: cheV-1 - chemotaxis protein CheV (TIGR), at 62,676 to 63,629 cheV-1 DVU0057: DVU0057 - transcriptional regulator, TetR family (TIGR), at 63,889 to 64,530 DVU0057 DVU0058: DVU0058 - efflux transporter, RND family, MFP subunit (TIGR), at 64,527 to 65,678 DVU0058 Position (kb) 63 64 65Strain fitness (log2 ratio) -1 0 1 2 3 4at 62.913 kb on - strand, within cheV-1at 62.928 kb on - strand, within cheV-1at 62.928 kb on - strand, within cheV-1at 62.960 kb on + strand, within cheV-1at 62.989 kb on - strand, within cheV-1at 63.049 kb on + strand, within cheV-1at 63.049 kb on + strand, within cheV-1at 63.057 kb on - strand, within cheV-1at 63.160 kb on - strand, within cheV-1at 63.213 kb on + strand, within cheV-1at 63.226 kb on - strand, within cheV-1at 63.247 kb on + strand, within cheV-1at 63.255 kb on - strand, within cheV-1at 63.276 kb on + strand, within cheV-1at 63.330 kb on + strand, within cheV-1at 63.380 kb on + strand, within cheV-1at 63.439 kb on + strand, within cheV-1at 63.439 kb on + strand, within cheV-1at 63.447 kb on - strand, within cheV-1at 63.447 kb on - strand, within cheV-1at 63.447 kb on - strand, within cheV-1at 63.457 kb on - strand, within cheV-1at 63.475 kb on - strand, within cheV-1at 63.484 kb on + strand, within cheV-1at 63.525 kb on - strand, within cheV-1at 63.537 kb on + strandat 63.538 kb on - strandat 63.545 kb on - strandat 63.579 kb on + strandat 63.741 kb on + strandat 63.824 kb on + strandat 63.824 kb on + strandat 63.831 kb on - strandat 64.007 kb on + strand, within DVU0057at 64.077 kb on + strand, within DVU0057at 64.150 kb on + strand, within DVU0057at 64.229 kb on + strand, within DVU0057at 64.229 kb on + strand, within DVU0057at 64.229 kb on + strand, within DVU0057at 64.299 kb on - strand, within DVU0057at 64.345 kb on + strand, within DVU0057at 64.348 kb on - strand, within DVU0057at 64.414 kb on + strand, within DVU0057at 64.416 kb on + strand, within DVU0057at 64.416 kb on + strand, within DVU0057at 64.421 kb on + strand, within DVU0057at 64.421 kb on + strand, within DVU0057at 64.590 kb on - strandat 64.600 kb on - strandat 64.600 kb on - strandat 64.648 kb on - strand, within DVU0058at 64.649 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.683 kb on - strand, within DVU0058at 64.689 kb on + strand, within DVU0058at 64.702 kb on - strand, within DVU0058at 64.743 kb on + strand, within DVU0058at 64.819 kb on - strand, within DVU0058at 64.860 kb on - strand, within DVU0058at 64.884 kb on + strand, within DVU0058at 64.907 kb on + strand, within DVU0058at 64.915 kb on - strand, within DVU0058at 64.917 kb on + strand, within DVU0058at 64.925 kb on - strand, within DVU0058at 64.952 kb on + strand, within DVU0058at 64.999 kb on - strand, within DVU0058at 65.050 kb on - strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.115 kb on + strand, within DVU0058at 65.116 kb on - strand, within DVU0058at 65.151 kb on - strand, within DVU0058at 65.177 kb on + strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.218 kb on - strand, within DVU0058at 65.235 kb on + strand, within DVU0058at 65.246 kb on + strand, within DVU0058at 65.255 kb on - strand, within DVU0058at 65.257 kb on + strand, within DVU0058at 65.461 kb on + strand, within DVU0058at 65.469 kb on + strand, within DVU0058

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
remove
62,913 - cheV-1 DVU0056 0.25 +0.7
62,928 - cheV-1 DVU0056 0.26 +0.3
62,928 - cheV-1 DVU0056 0.26 +0.0
62,960 + cheV-1 DVU0056 0.30 -0.3
62,989 - cheV-1 DVU0056 0.33 -0.6
63,049 + cheV-1 DVU0056 0.39 +0.9
63,049 + cheV-1 DVU0056 0.39 +0.3
63,057 - cheV-1 DVU0056 0.40 -1.2
63,160 - cheV-1 DVU0056 0.51 -0.1
63,213 + cheV-1 DVU0056 0.56 -0.1
63,226 - cheV-1 DVU0056 0.58 +0.7
63,247 + cheV-1 DVU0056 0.60 +0.1
63,255 - cheV-1 DVU0056 0.61 -0.1
63,276 + cheV-1 DVU0056 0.63 +0.1
63,330 + cheV-1 DVU0056 0.69 +0.7
63,380 + cheV-1 DVU0056 0.74 +0.3
63,439 + cheV-1 DVU0056 0.80 +0.2
63,439 + cheV-1 DVU0056 0.80 -0.2
63,447 - cheV-1 DVU0056 0.81 -1.4
63,447 - cheV-1 DVU0056 0.81 +1.1
63,447 - cheV-1 DVU0056 0.81 -0.2
63,457 - cheV-1 DVU0056 0.82 -0.2
63,475 - cheV-1 DVU0056 0.84 +0.1
63,484 + cheV-1 DVU0056 0.85 +1.3
63,525 - cheV-1 DVU0056 0.89 +1.1
63,537 + +0.9
63,538 - -0.4
63,545 - -0.8
63,579 + +0.1
63,741 + -0.1
63,824 + +3.8
63,824 + +0.2
63,831 - +0.9
64,007 + DVU0057 0.18 +0.9
64,077 + DVU0057 0.29 -1.3
64,150 + DVU0057 0.41 -0.5
64,229 + DVU0057 0.53 -0.5
64,229 + DVU0057 0.53 +0.2
64,229 + DVU0057 0.53 +1.5
64,299 - DVU0057 0.64 +0.6
64,345 + DVU0057 0.71 -0.9
64,348 - DVU0057 0.71 +0.5
64,414 + DVU0057 0.82 +0.1
64,416 + DVU0057 0.82 +2.5
64,416 + DVU0057 0.82 +0.2
64,421 + DVU0057 0.83 +0.7
64,421 + DVU0057 0.83 -0.5
64,590 - -1.4
64,600 - +1.1
64,600 - -0.1
64,648 - DVU0058 0.11 -0.3
64,649 + DVU0058 0.11 +0.0
64,675 + DVU0058 0.13 -0.7
64,675 + DVU0058 0.13 -0.3
64,675 + DVU0058 0.13 +0.6
64,683 - DVU0058 0.14 -1.1
64,689 + DVU0058 0.14 -0.2
64,702 - DVU0058 0.15 -0.0
64,743 + DVU0058 0.19 -0.7
64,819 - DVU0058 0.25 +0.3
64,860 - DVU0058 0.29 -0.4
64,884 + DVU0058 0.31 -0.2
64,907 + DVU0058 0.33 -0.2
64,915 - DVU0058 0.34 -0.3
64,917 + DVU0058 0.34 -0.9
64,925 - DVU0058 0.35 +3.0
64,952 + DVU0058 0.37 -1.0
64,999 - DVU0058 0.41 -0.4
65,050 - DVU0058 0.45 -0.4
65,073 + DVU0058 0.47 -0.2
65,073 + DVU0058 0.47 +0.0
65,073 + DVU0058 0.47 -0.3
65,115 + DVU0058 0.51 -0.2
65,116 - DVU0058 0.51 -0.4
65,151 - DVU0058 0.54 -0.6
65,177 + DVU0058 0.56 -0.3
65,185 - DVU0058 0.57 -0.5
65,185 - DVU0058 0.57 -0.1
65,185 - DVU0058 0.57 -0.7
65,210 + DVU0058 0.59 -0.0
65,210 + DVU0058 0.59 -0.0
65,210 + DVU0058 0.59 -0.6
65,210 + DVU0058 0.59 +0.8
65,218 - DVU0058 0.60 +0.1
65,235 + DVU0058 0.61 -0.6
65,246 + DVU0058 0.62 +0.1
65,255 - DVU0058 0.63 -0.5
65,257 + DVU0058 0.63 -0.6
65,461 + DVU0058 0.81 -0.4
65,469 + DVU0058 0.82 -1.2

Or see this region's nucleotide sequence