Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0013

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0012 and DVU0013 are separated by 160 nucleotidesDVU0013 and infA-1 are separated by 199 nucleotidesinfA-1 and lgt are separated by 115 nucleotides DVU0012: DVU0012 - hypothetical protein (TIGR), at 15,099 to 16,301 DVU0012 DVU0013: DVU0013 - sensory box histidine kinase (TIGR), at 16,462 to 18,270 DVU0013 DVU0014: infA-1 - translation initiation factor IF-1 (TIGR), at 18,470 to 18,688 infA-1 DVU0015: lgt - prolipoprotein diacylglyceryl transferase (TIGR), at 18,804 to 19,595 lgt Position (kb) 16 17 18 19Strain fitness (log2 ratio) -2 -1 0 1at 15.502 kb on - strand, within DVU0012at 15.522 kb on - strand, within DVU0012at 15.557 kb on - strand, within DVU0012at 15.733 kb on - strand, within DVU0012at 15.733 kb on - strand, within DVU0012at 15.838 kb on - strand, within DVU0012at 15.878 kb on + strand, within DVU0012at 15.986 kb on - strand, within DVU0012at 16.095 kb on + strand, within DVU0012at 16.150 kb on + strand, within DVU0012at 16.152 kb on + strand, within DVU0012at 16.153 kb on - strand, within DVU0012at 16.173 kb on + strand, within DVU0012at 16.188 kb on - strandat 16.288 kb on - strandat 16.288 kb on - strandat 16.314 kb on + strandat 16.367 kb on - strandat 16.425 kb on - strandat 16.444 kb on + strandat 16.461 kb on + strandat 16.467 kb on - strandat 16.699 kb on - strand, within DVU0013at 16.776 kb on + strand, within DVU0013at 16.835 kb on + strand, within DVU0013at 16.843 kb on - strand, within DVU0013at 16.843 kb on - strand, within DVU0013at 16.848 kb on + strand, within DVU0013at 16.853 kb on + strand, within DVU0013at 16.861 kb on - strand, within DVU0013at 16.893 kb on + strand, within DVU0013at 16.992 kb on - strand, within DVU0013at 17.060 kb on + strand, within DVU0013at 17.115 kb on - strand, within DVU0013at 17.237 kb on - strand, within DVU0013at 17.772 kb on - strand, within DVU0013at 17.781 kb on + strand, within DVU0013at 17.803 kb on + strand, within DVU0013at 17.810 kb on + strand, within DVU0013at 17.932 kb on + strand, within DVU0013at 18.039 kb on - strand, within DVU0013at 18.124 kb on + strandat 18.124 kb on + strandat 18.154 kb on + strandat 18.206 kb on - strandat 18.290 kb on + strandat 18.395 kb on + strandat 18.457 kb on - strandat 18.516 kb on - strand, within infA-1at 18.635 kb on + strand, within infA-1at 18.635 kb on + strand, within infA-1at 18.656 kb on + strand, within infA-1at 18.747 kb on - strandat 18.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
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15,502 - DVU0012 0.33 +0.2
15,522 - DVU0012 0.35 +0.2
15,557 - DVU0012 0.38 +0.6
15,733 - DVU0012 0.53 +0.2
15,733 - DVU0012 0.53 +0.1
15,838 - DVU0012 0.61 +0.2
15,878 + DVU0012 0.65 -0.2
15,986 - DVU0012 0.74 +0.2
16,095 + DVU0012 0.83 +0.2
16,150 + DVU0012 0.87 -2.6
16,152 + DVU0012 0.88 +0.0
16,153 - DVU0012 0.88 +0.6
16,173 + DVU0012 0.89 -0.8
16,188 - -0.0
16,288 - +0.1
16,288 - +0.0
16,314 + -2.4
16,367 - -0.6
16,425 - +1.3
16,444 + -0.8
16,461 + -0.0
16,467 - -0.6
16,699 - DVU0013 0.13 -0.7
16,776 + DVU0013 0.17 -0.1
16,835 + DVU0013 0.21 -0.1
16,843 - DVU0013 0.21 -1.2
16,843 - DVU0013 0.21 -2.2
16,848 + DVU0013 0.21 -1.1
16,853 + DVU0013 0.22 -0.9
16,861 - DVU0013 0.22 -0.4
16,893 + DVU0013 0.24 +0.4
16,992 - DVU0013 0.29 +0.4
17,060 + DVU0013 0.33 -0.6
17,115 - DVU0013 0.36 -2.3
17,237 - DVU0013 0.43 -0.1
17,772 - DVU0013 0.72 -1.0
17,781 + DVU0013 0.73 -0.6
17,803 + DVU0013 0.74 +0.0
17,810 + DVU0013 0.75 -0.6
17,932 + DVU0013 0.81 -1.1
18,039 - DVU0013 0.87 -2.2
18,124 + +0.4
18,124 + +0.0
18,154 + -2.7
18,206 - -0.3
18,290 + +0.3
18,395 + -0.7
18,457 - -0.8
18,516 - infA-1 DVU0014 0.21 -0.3
18,635 + infA-1 DVU0014 0.75 -0.1
18,635 + infA-1 DVU0014 0.75 -1.0
18,656 + infA-1 DVU0014 0.85 -0.3
18,747 - -0.2
18,811 + +1.7

Or see this region's nucleotide sequence