Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3277
Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Spectinomycin 0.025 mg/mL |
---|---|---|---|---|---|
remove | |||||
3,452,052 | - | +0.0 | |||
3,452,067 | + | -0.8 | |||
3,452,442 | + | DVU3277 | 0.24 | -0.6 | |
3,452,449 | - | DVU3277 | 0.31 | -2.0 | |
3,452,508 | - | +0.1 | |||
3,452,589 | - | +0.6 | |||
3,452,618 | + | -0.2 | |||
3,452,642 | + | -0.1 | |||
3,452,665 | - | -0.2 | |||
3,452,721 | - | htrA | DVU3278 | 0.13 | +0.5 |
3,452,752 | + | htrA | DVU3278 | 0.15 | -0.2 |
3,452,752 | + | htrA | DVU3278 | 0.15 | +0.1 |
3,452,752 | + | htrA | DVU3278 | 0.15 | -0.4 |
3,452,752 | + | htrA | DVU3278 | 0.15 | +1.0 |
3,452,760 | - | htrA | DVU3278 | 0.16 | -1.0 |
3,452,779 | + | htrA | DVU3278 | 0.17 | -0.8 |
3,452,787 | - | htrA | DVU3278 | 0.17 | +0.6 |
3,452,869 | + | htrA | DVU3278 | 0.23 | +1.2 |
3,452,912 | + | htrA | DVU3278 | 0.25 | -0.6 |
3,452,956 | - | htrA | DVU3278 | 0.28 | -0.1 |
3,452,980 | + | htrA | DVU3278 | 0.30 | -0.1 |
3,452,988 | - | htrA | DVU3278 | 0.30 | -0.4 |
3,452,995 | - | htrA | DVU3278 | 0.31 | -0.5 |
3,453,087 | - | htrA | DVU3278 | 0.37 | -2.6 |
3,453,087 | - | htrA | DVU3278 | 0.37 | +0.1 |
3,453,087 | - | htrA | DVU3278 | 0.37 | +1.0 |
3,453,087 | - | htrA | DVU3278 | 0.37 | -0.3 |
3,453,173 | - | htrA | DVU3278 | 0.42 | -0.8 |
3,453,188 | - | htrA | DVU3278 | 0.43 | -0.6 |
3,453,257 | + | htrA | DVU3278 | 0.48 | -0.7 |
3,453,261 | - | htrA | DVU3278 | 0.48 | -0.4 |
3,453,282 | - | htrA | DVU3278 | 0.49 | -0.5 |
3,453,324 | + | htrA | DVU3278 | 0.52 | +0.2 |
3,453,446 | - | htrA | DVU3278 | 0.60 | -0.4 |
3,453,461 | - | htrA | DVU3278 | 0.61 | -0.4 |
Or see this region's nucleotide sequence