Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3088

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with Spectinomycin 0.025 mg/mL
3,228,910	-	cobB-2	DVU3086	0.88	-1.7
3,228,910	-	cobB-2	DVU3086	0.88	-0.6
3,228,910	-	cobB-2	DVU3086	0.88	+0.7
3,228,910	-	cobB-2	DVU3086	0.88	-1.4
3,228,918	+	cobB-2	DVU3086	0.88	+0.3
3,228,921	+	cobB-2	DVU3086	0.88	-0.4
3,228,983	+				+0.3
3,228,991	-				-0.6
3,229,020	+				+0.9
3,229,020	+				+0.7
3,229,020	+				-0.3
3,229,104	-				+1.0
3,229,118	+				+1.3
3,229,128	+				-0.0
3,229,153	+				+0.3
3,229,276	-	cobH	DVU3087	0.21	+0.3
3,229,281	-	cobH	DVU3087	0.21	-0.2
3,229,281	-	cobH	DVU3087	0.21	+1.1
3,229,281	-	cobH	DVU3087	0.21	-0.1
3,229,312	+	cobH	DVU3087	0.26	-0.3
3,229,312	+	cobH	DVU3087	0.26	+0.3
3,229,408	-	cobH	DVU3087	0.41	-0.2
3,229,423	+	cobH	DVU3087	0.43	-0.3
3,229,489	+	cobH	DVU3087	0.54	+1.7
3,229,579	-	cobH	DVU3087	0.68	-0.2
3,229,604	-	cobH	DVU3087	0.72	-0.5
3,229,610	+	cobH	DVU3087	0.73	-0.4
3,229,613	-	cobH	DVU3087	0.73	-2.2
3,229,618	-	cobH	DVU3087	0.74	-0.4
3,229,647	-	cobH	DVU3087	0.78	-0.1
3,229,691	+	cobH	DVU3087	0.85	+0.2
3,229,691	+	cobH	DVU3087	0.85	+0.6
3,229,694	-	cobH	DVU3087	0.86	-0.0
3,229,852	+				+0.1
3,229,859	-				+1.1
3,229,898	+				+0.3
3,229,966	+				-0.7
3,230,011	-				-0.9
3,230,044	+				-1.0
3,230,059	+				+1.8
3,230,092	+	deaD	DVU3088	0.11	-0.9
3,230,093	-	deaD	DVU3088	0.11	-1.9
3,230,097	+	deaD	DVU3088	0.12	-0.2
3,230,100	-	deaD	DVU3088	0.12	-1.3
3,230,136	-	deaD	DVU3088	0.14	-0.1
3,230,175	-	deaD	DVU3088	0.16	-0.1
3,230,178	+	deaD	DVU3088	0.16	-0.6
3,230,197	+	deaD	DVU3088	0.17	-0.7
3,230,308	+	deaD	DVU3088	0.24	-0.9
3,230,337	+	deaD	DVU3088	0.26	-1.3
3,230,349	+	deaD	DVU3088	0.26	-0.3
3,230,406	+	deaD	DVU3088	0.30	-1.3
3,230,421	+	deaD	DVU3088	0.30	-0.0
3,230,448	+	deaD	DVU3088	0.32	-0.6
3,230,462	+	deaD	DVU3088	0.33	-0.4
3,230,566	+	deaD	DVU3088	0.39	+0.5
3,230,567	+	deaD	DVU3088	0.39	-0.1
3,230,682	+	deaD	DVU3088	0.45	-0.2
3,230,689	+	deaD	DVU3088	0.46	+0.3
3,230,747	-	deaD	DVU3088	0.49	+0.7
3,230,793	-	deaD	DVU3088	0.52	-1.6
3,230,806	-	deaD	DVU3088	0.53	+0.1
3,230,981	-	deaD	DVU3088	0.63	-1.2
3,231,017	+	deaD	DVU3088	0.65	-0.6
3,231,019	+	deaD	DVU3088	0.65	+0.7
3,231,080	-	deaD	DVU3088	0.68	-0.8
3,231,119	-	deaD	DVU3088	0.71	-0.8
3,231,156	+	deaD	DVU3088	0.73	-1.2
3,231,173	-	deaD	DVU3088	0.74	-0.6
3,231,209	-	deaD	DVU3088	0.76	-1.0
3,231,280	-	deaD	DVU3088	0.80	-0.7
3,231,381	-	deaD	DVU3088	0.86	-0.8
3,231,445	+	deaD	DVU3088	0.89	-0.3
3,231,457	-				+0.3
3,231,650	+		DVU3089	0.11	-0.6
3,231,796	+		DVU3089	0.39	-0.5
3,231,796	+		DVU3089	0.39	+0.2
3,231,935	-		DVU3089	0.67	-0.8
3,231,949	+		DVU3089	0.70	-0.0
3,231,961	+		DVU3089	0.72	-1.6
3,232,027	+		DVU3089	0.85	+0.1
3,232,122	+				+0.2
3,232,213	+				+0.3
3,232,295	+				+0.0
3,232,301	+				+0.7
3,232,372	+				-0.1
3,232,375	-				-0.5
3,232,377	+				-2.2
3,232,407	+				-0.0
3,232,415	-				-0.2
3,232,415	-				-0.3
3,232,415	-				-0.5
3,232,489	+				-1.4
3,232,521	-				+0.1
3,232,555	-				-0.6
3,232,601	-				+1.0
3,232,601	-				-0.3