Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2300
Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Spectinomycin 0.025 mg/mL |
---|---|---|---|---|---|
remove | |||||
2,393,430 | + | proV | DVU2299 | 0.37 | -0.4 |
2,393,438 | + | proV | DVU2299 | 0.37 | -0.4 |
2,393,438 | + | proV | DVU2299 | 0.37 | -0.4 |
2,393,440 | + | proV | DVU2299 | 0.37 | -0.8 |
2,393,464 | - | proV | DVU2299 | 0.39 | -0.1 |
2,393,469 | - | proV | DVU2299 | 0.40 | -0.5 |
2,393,518 | + | proV | DVU2299 | 0.44 | -0.8 |
2,393,533 | + | proV | DVU2299 | 0.45 | -1.3 |
2,393,541 | - | proV | DVU2299 | 0.46 | -0.4 |
2,393,620 | + | proV | DVU2299 | 0.52 | -0.7 |
2,393,688 | + | proV | DVU2299 | 0.58 | -0.3 |
2,393,696 | - | proV | DVU2299 | 0.59 | -0.4 |
2,393,731 | + | proV | DVU2299 | 0.62 | -0.6 |
2,393,739 | - | proV | DVU2299 | 0.62 | -0.7 |
2,393,747 | - | proV | DVU2299 | 0.63 | +0.2 |
2,393,793 | - | proV | DVU2299 | 0.67 | +0.8 |
2,393,816 | + | proV | DVU2299 | 0.69 | -1.2 |
2,393,816 | + | proV | DVU2299 | 0.69 | -1.7 |
2,393,821 | + | proV | DVU2299 | 0.69 | -0.6 |
2,393,824 | - | proV | DVU2299 | 0.70 | +0.8 |
2,393,826 | + | proV | DVU2299 | 0.70 | +0.1 |
2,393,830 | + | proV | DVU2299 | 0.70 | -0.2 |
2,393,878 | + | proV | DVU2299 | 0.74 | -0.3 |
2,394,201 | - | -0.2 | |||
2,394,213 | + | -0.3 | |||
2,394,221 | - | -0.1 | |||
2,394,257 | - | -0.8 | |||
2,394,294 | + | -0.8 | |||
2,394,342 | + | DVU2300 | 0.12 | -1.3 | |
2,394,618 | - | -0.1 | |||
2,394,618 | - | -0.5 | |||
2,394,693 | - | +1.0 | |||
2,394,714 | + | -0.2 | |||
2,394,794 | + | -0.2 | |||
2,394,810 | - | -0.8 | |||
2,394,838 | - | -0.0 | |||
2,394,857 | + | DVU2302 | 0.11 | -0.0 | |
2,394,860 | - | DVU2302 | 0.11 | -1.7 | |
2,394,886 | + | DVU2302 | 0.12 | -0.3 | |
2,394,914 | + | DVU2302 | 0.14 | +0.4 | |
2,394,917 | - | DVU2302 | 0.14 | +0.1 | |
2,394,923 | + | DVU2302 | 0.14 | +0.2 | |
2,394,984 | - | DVU2302 | 0.17 | -0.1 | |
2,395,028 | + | DVU2302 | 0.19 | -1.3 | |
2,395,106 | - | DVU2302 | 0.23 | +0.1 | |
2,395,208 | + | DVU2302 | 0.28 | -0.3 | |
2,395,289 | - | DVU2302 | 0.32 | -0.3 | |
2,395,333 | + | DVU2302 | 0.34 | -0.4 | |
2,395,336 | - | DVU2302 | 0.34 | +0.1 | |
2,395,357 | - | DVU2302 | 0.35 | -0.2 | |
2,395,368 | + | DVU2302 | 0.36 | -0.2 | |
2,395,418 | - | DVU2302 | 0.38 | -0.1 | |
2,395,418 | - | DVU2302 | 0.38 | +0.3 | |
2,395,427 | + | DVU2302 | 0.39 | +0.3 |
Or see this region's nucleotide sequence