Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1676

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1674 and DVU1675 are separated by 58 nucleotidesDVU1675 and tRNA-Leu are separated by 240 nucleotidestRNA-Leu and secG are separated by 12 nucleotidessecG and tpiA are separated by 37 nucleotidestpiA and rimI are separated by 19 nucleotides DVU1674: DVU1674 - transcriptional regulator, putative (TIGR), at 1,754,716 to 1,755,330 DVU1674 DVU1675: DVU1675 - hypothetical protein (TIGR), at 1,755,389 to 1,755,553 DVU1675 DVU_tRNA-Leu-4: tRNA-Leu - tRNA with anticodon GAG for Leu (VIMSS-AUTO), at 1,755,794 to 1,755,880 tRNA-Leu DVU1676: secG - preprotein translocase, SecG subunit (TIGR), at 1,755,893 to 1,756,243 secG DVU1677: tpiA - triosephosphate isomerase (TIGR), at 1,756,281 to 1,757,036 tpiA DVU1678: rimI - ribosomal-protein-alanine acetyltransferase (TIGR), at 1,757,056 to 1,757,550 rimI Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -1 0 1at 1755.330 kb on - strandat 1755.564 kb on - strandat 1755.670 kb on - strandat 1755.675 kb on + strandat 1755.818 kb on - strand, within tRNA-Leuat 1755.843 kb on + strand, within tRNA-Leuat 1755.924 kb on + strandat 1755.932 kb on - strand, within secGat 1755.999 kb on + strand, within secGat 1757.061 kb on - strandat 1757.161 kb on + strand, within rimIat 1757.216 kb on - strand, within rimI

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
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1,755,330 - -0.2
1,755,564 - -0.0
1,755,670 - -0.1
1,755,675 + -1.0
1,755,818 - tRNA-Leu DVU_tRNA-Leu-4 0.28 +0.2
1,755,843 + tRNA-Leu DVU_tRNA-Leu-4 0.56 +0.7
1,755,924 + -0.5
1,755,932 - secG DVU1676 0.11 -0.6
1,755,999 + secG DVU1676 0.30 -0.5
1,757,061 - -0.9
1,757,161 + rimI DVU1678 0.21 -1.0
1,757,216 - rimI DVU1678 0.32 -0.6

Or see this region's nucleotide sequence