Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1294

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF10446 and DVU1294 are separated by 90 nucleotidesDVU1294 and sat are separated by 151 nucleotides DORF10446: DORF10446 - SEED: FIG00604570: hypothetical protein, at 1,385,824 to 1,386,771 DORF10446 DVU1294: DVU1294 - conserved hypothetical protein (TIGR), at 1,386,862 to 1,387,560 DVU1294 DVU1295: sat - sulfate adenylyltransferase (TIGR), at 1,387,712 to 1,388,995 sat Position (kb) 1386 1387 1388Strain fitness (log2 ratio) -2 -1 0 1at 1385.955 kb on + strand, within DORF10446at 1385.981 kb on - strand, within DORF10446at 1386.023 kb on + strand, within DORF10446at 1386.113 kb on + strand, within DORF10446at 1386.289 kb on + strand, within DORF10446at 1386.333 kb on + strand, within DORF10446at 1386.430 kb on + strand, within DORF10446at 1386.433 kb on - strand, within DORF10446at 1386.473 kb on + strand, within DORF10446at 1386.517 kb on + strand, within DORF10446at 1386.549 kb on - strand, within DORF10446at 1386.631 kb on - strand, within DORF10446at 1386.704 kb on + strandat 1386.727 kb on + strandat 1386.822 kb on - strandat 1386.826 kb on + strandat 1386.836 kb on + strandat 1386.836 kb on + strandat 1386.836 kb on + strandat 1386.836 kb on + strandat 1386.844 kb on - strandat 1386.856 kb on + strandat 1386.892 kb on + strandat 1387.023 kb on + strand, within DVU1294at 1387.068 kb on + strand, within DVU1294at 1387.267 kb on + strand, within DVU1294at 1387.465 kb on - strand, within DVU1294at 1387.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
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1,385,955 + DORF10446 0.14 +0.1
1,385,981 - DORF10446 0.17 +0.9
1,386,023 + DORF10446 0.21 +1.3
1,386,113 + DORF10446 0.30 +0.0
1,386,289 + DORF10446 0.49 +0.6
1,386,333 + DORF10446 0.54 +0.9
1,386,430 + DORF10446 0.64 +0.4
1,386,433 - DORF10446 0.64 +0.5
1,386,473 + DORF10446 0.68 +1.0
1,386,517 + DORF10446 0.73 +0.7
1,386,549 - DORF10446 0.76 -0.2
1,386,631 - DORF10446 0.85 -0.1
1,386,704 + +0.5
1,386,727 + +1.4
1,386,822 - -0.1
1,386,826 + -2.0
1,386,836 + +0.1
1,386,836 + -0.2
1,386,836 + -0.7
1,386,836 + -0.4
1,386,844 - -1.0
1,386,856 + -0.3
1,386,892 + -0.5
1,387,023 + DVU1294 0.23 +0.0
1,387,068 + DVU1294 0.29 +0.1
1,387,267 + DVU1294 0.58 +0.5
1,387,465 - DVU1294 0.86 +0.2
1,387,640 + +0.2

Or see this region's nucleotide sequence