Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1082
Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Spectinomycin 0.025 mg/mL |
---|---|---|---|---|---|
remove | |||||
1,185,348 | - | DVU1081 | 0.46 | +0.1 | |
1,185,355 | + | DVU1081 | 0.46 | -0.3 | |
1,185,392 | + | DVU1081 | 0.48 | +1.8 | |
1,185,576 | + | DVU1081 | 0.60 | -0.5 | |
1,185,591 | + | DVU1081 | 0.61 | -0.6 | |
1,185,619 | + | DVU1081 | 0.62 | -1.3 | |
1,185,627 | - | DVU1081 | 0.63 | -1.9 | |
1,185,707 | + | DVU1081 | 0.68 | -0.3 | |
1,185,707 | + | DVU1081 | 0.68 | +0.2 | |
1,185,717 | - | DVU1081 | 0.68 | -0.8 | |
1,185,738 | + | DVU1081 | 0.70 | +0.2 | |
1,185,797 | + | DVU1081 | 0.73 | -1.7 | |
1,185,857 | + | DVU1081 | 0.77 | -0.3 | |
1,185,933 | + | DVU1081 | 0.82 | +0.0 | |
1,185,933 | + | DVU1081 | 0.82 | -0.7 | |
1,185,941 | - | DVU1081 | 0.82 | -0.2 | |
1,186,018 | + | DVU1081 | 0.87 | +0.6 | |
1,186,085 | - | +0.2 | |||
1,186,487 | + | DVU1082 | 0.23 | -1.0 | |
1,186,621 | - | DVU1082 | 0.45 | +0.5 | |
1,186,835 | + | DVU1082 | 0.80 | -0.8 | |
1,186,843 | - | DVU1082 | 0.82 | -0.5 | |
1,186,858 | - | DVU1082 | 0.84 | -0.7 | |
1,187,052 | + | +0.0 | |||
1,187,064 | + | +0.6 | |||
1,187,118 | + | -1.0 | |||
1,187,873 | + | +0.4 | |||
1,187,923 | - | pstB-1 | DVU1084 | 0.10 | +0.4 |
Or see this region's nucleotide sequence