Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0888
Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Spectinomycin 0.025 mg/mL |
---|---|---|---|---|---|
remove | |||||
977,233 | + | mltA | DVU0887 | 0.32 | -0.6 |
977,238 | + | mltA | DVU0887 | 0.32 | -0.1 |
977,254 | + | mltA | DVU0887 | 0.34 | -1.2 |
977,340 | - | mltA | DVU0887 | 0.40 | -0.8 |
977,384 | - | mltA | DVU0887 | 0.44 | -0.0 |
977,405 | + | mltA | DVU0887 | 0.45 | -0.1 |
977,419 | - | mltA | DVU0887 | 0.47 | +0.0 |
977,419 | - | mltA | DVU0887 | 0.47 | -0.1 |
977,601 | + | mltA | DVU0887 | 0.61 | -0.3 |
977,639 | - | mltA | DVU0887 | 0.64 | -0.3 |
977,663 | - | mltA | DVU0887 | 0.66 | -0.0 |
977,673 | - | mltA | DVU0887 | 0.67 | +0.1 |
977,751 | + | mltA | DVU0887 | 0.73 | -0.1 |
977,794 | + | mltA | DVU0887 | 0.76 | -0.4 |
977,794 | + | mltA | DVU0887 | 0.76 | -0.0 |
977,817 | - | mltA | DVU0887 | 0.78 | +0.0 |
977,821 | + | mltA | DVU0887 | 0.78 | -1.3 |
977,823 | + | mltA | DVU0887 | 0.78 | -1.0 |
977,869 | - | mltA | DVU0887 | 0.82 | +0.0 |
977,889 | + | mltA | DVU0887 | 0.83 | +0.1 |
977,897 | - | mltA | DVU0887 | 0.84 | -0.5 |
977,955 | + | mltA | DVU0887 | 0.89 | -0.1 |
977,959 | + | mltA | DVU0887 | 0.89 | -0.7 |
977,967 | - | mltA | DVU0887 | 0.90 | -1.2 |
977,976 | + | -0.0 | |||
977,984 | - | +1.8 | |||
978,023 | - | -0.8 | |||
978,023 | - | +0.1 | |||
978,036 | + | -1.2 | |||
978,070 | + | -0.5 | |||
978,075 | + | -0.4 | |||
978,128 | - | -0.5 | |||
978,144 | - | +0.3 | |||
978,144 | - | -0.1 | |||
978,144 | - | -1.4 | |||
978,283 | - | -0.1 | |||
978,315 | - | -0.1 | |||
978,315 | - | -0.1 | |||
978,354 | + | -0.2 | |||
978,359 | + | -0.1 | |||
978,367 | - | DVU0888 | 0.10 | +0.2 | |
978,367 | - | DVU0888 | 0.10 | -0.9 | |
978,389 | - | DVU0888 | 0.12 | -0.6 | |
978,486 | + | DVU0888 | 0.17 | -1.3 | |
978,516 | + | DVU0888 | 0.19 | -0.1 | |
978,554 | + | DVU0888 | 0.21 | -0.5 | |
978,744 | - | DVU0888 | 0.32 | -0.3 | |
978,837 | + | DVU0888 | 0.38 | +0.0 | |
978,933 | + | DVU0888 | 0.43 | -0.4 | |
979,046 | + | DVU0888 | 0.50 | +1.0 | |
979,101 | + | DVU0888 | 0.53 | -0.7 | |
979,141 | - | DVU0888 | 0.56 | +0.3 | |
979,146 | + | DVU0888 | 0.56 | -0.4 | |
979,154 | - | DVU0888 | 0.56 | -0.6 | |
979,311 | + | DVU0888 | 0.65 | -0.9 | |
979,378 | - | DVU0888 | 0.69 | -1.2 | |
979,411 | - | DVU0888 | 0.71 | -0.2 | |
979,411 | - | DVU0888 | 0.71 | +0.3 | |
979,594 | - | DVU0888 | 0.82 | -0.6 | |
979,773 | - | +0.1 | |||
979,835 | - | +0.3 | |||
979,905 | - | -0.3 | |||
979,905 | - | -0.9 | |||
980,024 | - | +1.3 | |||
980,057 | + | +0.1 | |||
980,101 | - | -0.4 | |||
980,145 | - | DVU0889 | 0.13 | -0.1 | |
980,179 | + | DVU0889 | 0.16 | -0.2 | |
980,202 | - | DVU0889 | 0.18 | -0.1 | |
980,299 | - | DVU0889 | 0.26 | +0.8 | |
980,330 | - | DVU0889 | 0.29 | +0.3 | |
980,340 | + | DVU0889 | 0.30 | -0.3 | |
980,348 | - | DVU0889 | 0.31 | +0.2 | |
980,429 | + | DVU0889 | 0.38 | -0.6 | |
980,431 | - | DVU0889 | 0.38 | -1.0 | |
980,437 | - | DVU0889 | 0.39 | +0.7 | |
980,463 | - | DVU0889 | 0.41 | -0.0 | |
980,512 | - | DVU0889 | 0.45 | -1.3 | |
980,524 | + | DVU0889 | 0.46 | +0.5 | |
980,524 | + | DVU0889 | 0.46 | +0.7 | |
980,577 | - | DVU0889 | 0.51 | +0.1 | |
980,592 | + | DVU0889 | 0.52 | -1.4 | |
980,613 | + | DVU0889 | 0.54 | -0.4 | |
980,705 | + | DVU0889 | 0.62 | -0.0 | |
980,731 | + | DVU0889 | 0.64 | +0.7 | |
980,731 | + | DVU0889 | 0.64 | -0.2 | |
980,738 | - | DVU0889 | 0.65 | -1.3 | |
980,739 | - | DVU0889 | 0.65 | -0.3 |
Or see this region's nucleotide sequence