Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ptsI and ptsH are separated by 10 nucleotides ptsH and DVU0831 are separated by 60 nucleotides DVU0831 and DVU0832 are separated by 415 nucleotides
DVU0829: ptsI - phosphoenolpyruvate-protein phosphotransferase (TIGR), at 919,099 to 920,871
ptsI
DVU0830: ptsH - phosphocarrier protein HPr (TIGR), at 920,882 to 921,142
ptsH
DVU0831: DVU0831 - PTS system, IID component, putative (TIGR), at 921,203 to 921,961
DVU0831
DVU0832: DVU0832 - tetrapyrrole methylase family protein (TIGR), at 922,377 to 923,204
DVU0832
Position (kb) 921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 920.314 kb on - strand, within ptsI at 921.108 kb on - strand, within ptsH at 921.231 kb on - strand at 921.384 kb on + strand, within DVU0831 at 921.384 kb on + strand, within DVU0831 at 921.428 kb on - strand, within DVU0831 at 921.475 kb on + strand, within DVU0831 at 921.482 kb on - strand, within DVU0831 at 921.493 kb on + strand, within DVU0831 at 921.557 kb on - strand, within DVU0831 at 921.583 kb on + strand, within DVU0831 at 921.594 kb on + strand, within DVU0831 at 921.708 kb on - strand, within DVU0831 at 921.819 kb on + strand, within DVU0831 at 921.933 kb on + strand at 921.941 kb on - strand at 922.102 kb on + strand at 922.174 kb on - strand at 922.184 kb on - strand at 922.184 kb on - strand at 922.223 kb on - strand at 922.297 kb on - strand at 922.304 kb on - strand at 922.321 kb on - strand at 922.335 kb on - strand at 922.380 kb on + strand at 922.499 kb on - strand, within DVU0832 at 922.519 kb on - strand, within DVU0832 at 922.546 kb on + strand, within DVU0832 at 922.554 kb on - strand, within DVU0832 at 922.598 kb on - strand, within DVU0832 at 922.620 kb on + strand, within DVU0832 at 922.740 kb on + strand, within DVU0832 at 922.746 kb on - strand, within DVU0832 at 922.791 kb on + strand, within DVU0832 at 922.875 kb on + strand, within DVU0832 at 922.880 kb on - strand, within DVU0832 at 922.883 kb on - strand, within DVU0832 at 922.907 kb on + strand, within DVU0832
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 920,314 - ptsI DVU0829 0.69 -1.0 921,108 - ptsH DVU0830 0.87 +0.2 921,231 - -0.3 921,384 + DVU0831 0.24 -3.1 921,384 + DVU0831 0.24 -0.8 921,428 - DVU0831 0.30 -1.2 921,475 + DVU0831 0.36 -1.4 921,482 - DVU0831 0.37 -1.7 921,493 + DVU0831 0.38 -0.3 921,557 - DVU0831 0.47 -1.4 921,583 + DVU0831 0.50 +0.4 921,594 + DVU0831 0.52 -0.3 921,708 - DVU0831 0.67 -1.5 921,819 + DVU0831 0.81 -1.6 921,933 + +0.2 921,941 - -1.4 922,102 + -1.2 922,174 - -0.1 922,184 - +0.4 922,184 - -0.1 922,223 - -0.2 922,297 - -1.2 922,304 - -0.6 922,321 - +0.5 922,335 - -0.0 922,380 + +0.4 922,499 - DVU0832 0.15 -1.1 922,519 - DVU0832 0.17 -0.7 922,546 + DVU0832 0.20 -0.1 922,554 - DVU0832 0.21 -0.3 922,598 - DVU0832 0.27 -0.6 922,620 + DVU0832 0.29 +0.1 922,740 + DVU0832 0.44 -0.0 922,746 - DVU0832 0.45 +2.7 922,791 + DVU0832 0.50 -0.2 922,875 + DVU0832 0.60 +0.1 922,880 - DVU0832 0.61 -0.4 922,883 - DVU0832 0.61 +0.7 922,907 + DVU0832 0.64 +0.1
Or see this region's nucleotide sequence