Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsbV and DVU1996 are separated by 598 nucleotides DVU1996 and DORF14879 are separated by 1 nucleotides DORF14879 and DVU1999 are separated by 500 nucleotides
DVU1995: rsbV - anti-anti-sigma factor (TIGR), at 2,076,256 to 2,076,585
rsbV
DVU1996: DVU1996 - quaternary ammonium compound-resistance protein QacC, putative (TIGR), at 2,077,184 to 2,077,513
DVU1996
DORF14879: DORF14879 - no description, at 2,077,515 to 2,079,059
DORF14879
DVU1999: DVU1999 - sulfate transporter family protein (TIGR), at 2,079,560 to 2,081,704
DVU1999
Position (kb)
2077
2078
2079
2080 Strain fitness (log2 ratio)
-2
-1
0
1 at 2076.585 kb on + strand at 2076.603 kb on - strand at 2076.619 kb on + strand at 2076.629 kb on - strand at 2076.645 kb on - strand at 2076.670 kb on - strand at 2076.813 kb on + strand at 2076.857 kb on - strand at 2076.857 kb on - strand at 2076.902 kb on - strand at 2076.902 kb on - strand at 2076.960 kb on + strand at 2077.062 kb on - strand at 2077.083 kb on - strand at 2077.244 kb on + strand, within DVU1996 at 2077.379 kb on + strand, within DVU1996 at 2077.470 kb on + strand, within DVU1996 at 2077.479 kb on - strand, within DVU1996 at 2077.874 kb on + strand, within DORF14879 at 2078.046 kb on - strand, within DORF14879 at 2078.293 kb on + strand, within DORF14879 at 2078.734 kb on - strand, within DORF14879 at 2079.263 kb on + strand at 2079.287 kb on - strand at 2079.296 kb on + strand at 2079.299 kb on - strand at 2079.419 kb on + strand at 2079.419 kb on + strand at 2079.582 kb on + strand at 2079.637 kb on - strand at 2079.677 kb on + strand at 2079.677 kb on + strand at 2079.680 kb on - strand at 2079.680 kb on - strand at 2079.680 kb on - strand at 2079.763 kb on - strand at 2079.776 kb on + strand, within DVU1999 at 2079.834 kb on - strand, within DVU1999 at 2079.910 kb on + strand, within DVU1999 at 2080.022 kb on - strand, within DVU1999
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 2,076,585 + -0.3 2,076,603 - +0.4 2,076,619 + -0.3 2,076,629 - +0.2 2,076,645 - -2.0 2,076,670 - +0.2 2,076,813 + +0.0 2,076,857 - -0.9 2,076,857 - -0.5 2,076,902 - +0.3 2,076,902 - -0.4 2,076,960 + -0.0 2,077,062 - -2.0 2,077,083 - -0.3 2,077,244 + DVU1996 0.18 -0.3 2,077,379 + DVU1996 0.59 -0.6 2,077,470 + DVU1996 0.87 -0.1 2,077,479 - DVU1996 0.89 -0.1 2,077,874 + DORF14879 0.23 +0.1 2,078,046 - DORF14879 0.34 +0.3 2,078,293 + DORF14879 0.50 -0.5 2,078,734 - DORF14879 0.79 -0.4 2,079,263 + -0.1 2,079,287 - +0.7 2,079,296 + -1.0 2,079,299 - -0.7 2,079,419 + +1.2 2,079,419 + +0.0 2,079,582 + +0.1 2,079,637 - +0.0 2,079,677 + -0.3 2,079,677 + -1.4 2,079,680 - -1.0 2,079,680 - -1.0 2,079,680 - -0.1 2,079,763 - -1.3 2,079,776 + DVU1999 0.10 +0.5 2,079,834 - DVU1999 0.13 -0.4 2,079,910 + DVU1999 0.16 -1.1 2,080,022 - DVU1999 0.22 +0.0
Or see this region's nucleotide sequence