Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0445

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0444 and DVU0445 are separated by 8 nucleotidesDVU0445 and DVU0446 are separated by 148 nucleotides DVU0444: DVU0444 - CBS domain protein (TIGR), at 501,938 to 504,160 DVU0444 DVU0445: DVU0445 - CBS domain protein (TIGR), at 504,169 to 505,893 DVU0445 DVU0446: DVU0446 - sodium/solute symporter family protein (TIGR), at 506,042 to 507,589 DVU0446 Position (kb) 504 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 503.212 kb on - strand, within DVU0444at 503.212 kb on - strand, within DVU0444at 503.224 kb on + strand, within DVU0444at 503.224 kb on + strand, within DVU0444at 503.232 kb on - strand, within DVU0444at 503.234 kb on + strand, within DVU0444at 503.242 kb on - strand, within DVU0444at 503.242 kb on - strand, within DVU0444at 503.248 kb on + strand, within DVU0444at 503.266 kb on - strand, within DVU0444at 503.320 kb on - strand, within DVU0444at 503.348 kb on + strand, within DVU0444at 503.349 kb on + strand, within DVU0444at 503.431 kb on + strand, within DVU0444at 503.459 kb on + strand, within DVU0444at 503.459 kb on + strand, within DVU0444at 503.505 kb on + strand, within DVU0444at 503.516 kb on + strand, within DVU0444at 503.553 kb on - strand, within DVU0444at 503.723 kb on - strand, within DVU0444at 503.756 kb on + strand, within DVU0444at 503.800 kb on + strand, within DVU0444at 503.863 kb on - strand, within DVU0444at 503.872 kb on - strand, within DVU0444at 503.881 kb on + strand, within DVU0444at 503.972 kb on + strandat 503.980 kb on - strandat 503.997 kb on + strandat 504.007 kb on - strandat 504.007 kb on - strandat 504.030 kb on + strandat 504.123 kb on + strandat 504.154 kb on - strandat 504.160 kb on + strandat 504.160 kb on + strandat 504.206 kb on - strandat 504.333 kb on - strandat 504.382 kb on + strand, within DVU0445at 504.427 kb on - strand, within DVU0445at 504.432 kb on - strand, within DVU0445at 504.457 kb on + strand, within DVU0445at 504.469 kb on + strand, within DVU0445at 504.484 kb on - strand, within DVU0445at 504.489 kb on + strand, within DVU0445at 504.497 kb on - strand, within DVU0445at 504.517 kb on - strand, within DVU0445at 504.561 kb on + strand, within DVU0445at 504.587 kb on + strand, within DVU0445at 504.587 kb on + strand, within DVU0445at 504.587 kb on + strand, within DVU0445at 504.595 kb on - strand, within DVU0445at 504.648 kb on - strand, within DVU0445at 504.648 kb on - strand, within DVU0445at 504.661 kb on - strand, within DVU0445at 504.663 kb on + strand, within DVU0445at 504.663 kb on + strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.697 kb on + strand, within DVU0445at 504.705 kb on - strand, within DVU0445at 504.800 kb on + strand, within DVU0445at 504.832 kb on - strand, within DVU0445at 504.848 kb on + strand, within DVU0445at 504.875 kb on - strand, within DVU0445at 504.904 kb on - strand, within DVU0445at 504.924 kb on - strand, within DVU0445at 504.930 kb on - strand, within DVU0445at 504.964 kb on + strand, within DVU0445at 504.972 kb on - strand, within DVU0445at 504.972 kb on - strand, within DVU0445at 504.990 kb on - strand, within DVU0445at 505.007 kb on + strand, within DVU0445at 505.015 kb on - strand, within DVU0445at 505.015 kb on - strand, within DVU0445at 505.015 kb on - strand, within DVU0445at 505.036 kb on + strand, within DVU0445at 505.156 kb on - strand, within DVU0445at 505.176 kb on + strand, within DVU0445at 505.195 kb on + strand, within DVU0445at 505.230 kb on + strand, within DVU0445at 505.240 kb on + strand, within DVU0445at 505.267 kb on + strand, within DVU0445at 505.334 kb on - strand, within DVU0445at 505.363 kb on + strand, within DVU0445at 505.371 kb on - strand, within DVU0445at 505.492 kb on + strand, within DVU0445at 505.519 kb on + strand, within DVU0445at 505.527 kb on - strand, within DVU0445at 505.565 kb on - strand, within DVU0445at 505.585 kb on - strand, within DVU0445at 505.615 kb on + strand, within DVU0445at 505.627 kb on + strand, within DVU0445at 505.724 kb on - strandat 505.754 kb on - strandat 505.777 kb on + strandat 505.846 kb on - strandat 505.897 kb on + strandat 505.995 kb on - strandat 506.039 kb on + strandat 506.109 kb on - strandat 506.207 kb on + strand, within DVU0446at 506.207 kb on + strand, within DVU0446at 506.215 kb on - strand, within DVU0446at 506.216 kb on + strand, within DVU0446at 506.276 kb on + strand, within DVU0446at 506.284 kb on - strand, within DVU0446at 506.284 kb on - strand, within DVU0446at 506.284 kb on - strand, within DVU0446at 506.338 kb on + strand, within DVU0446at 506.346 kb on - strand, within DVU0446at 506.406 kb on + strand, within DVU0446at 506.475 kb on + strand, within DVU0446at 506.475 kb on - strand, within DVU0446at 506.490 kb on + strand, within DVU0446at 506.543 kb on + strand, within DVU0446at 506.551 kb on - strand, within DVU0446at 506.558 kb on - strand, within DVU0446at 506.693 kb on + strand, within DVU0446at 506.736 kb on - strand, within DVU0446at 506.796 kb on + strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.848 kb on - strand, within DVU0446at 506.887 kb on - strand, within DVU0446

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
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503,212 - DVU0444 0.57 -0.6
503,212 - DVU0444 0.57 +1.2
503,224 + DVU0444 0.58 +0.5
503,224 + DVU0444 0.58 +0.1
503,232 - DVU0444 0.58 -0.4
503,234 + DVU0444 0.58 -0.4
503,242 - DVU0444 0.59 -0.7
503,242 - DVU0444 0.59 -0.7
503,248 + DVU0444 0.59 +0.3
503,266 - DVU0444 0.60 +0.3
503,320 - DVU0444 0.62 -0.2
503,348 + DVU0444 0.63 -0.4
503,349 + DVU0444 0.63 +0.3
503,431 + DVU0444 0.67 -0.3
503,459 + DVU0444 0.68 +0.5
503,459 + DVU0444 0.68 -1.2
503,505 + DVU0444 0.70 +0.4
503,516 + DVU0444 0.71 -2.2
503,553 - DVU0444 0.73 -0.1
503,723 - DVU0444 0.80 -0.3
503,756 + DVU0444 0.82 +1.6
503,800 + DVU0444 0.84 -0.0
503,863 - DVU0444 0.87 -1.0
503,872 - DVU0444 0.87 +0.2
503,881 + DVU0444 0.87 -0.1
503,972 + -0.2
503,980 - +0.1
503,997 + -0.3
504,007 - -0.4
504,007 - -0.3
504,030 + -0.2
504,123 + +0.3
504,154 - -0.1
504,160 + +0.4
504,160 + +0.8
504,206 - -0.6
504,333 - -0.4
504,382 + DVU0445 0.12 +0.9
504,427 - DVU0445 0.15 -2.8
504,432 - DVU0445 0.15 -0.4
504,457 + DVU0445 0.17 -0.2
504,469 + DVU0445 0.17 +0.1
504,484 - DVU0445 0.18 +0.0
504,489 + DVU0445 0.19 +0.7
504,497 - DVU0445 0.19 -0.0
504,517 - DVU0445 0.20 -0.3
504,561 + DVU0445 0.23 +0.1
504,587 + DVU0445 0.24 -0.1
504,587 + DVU0445 0.24 -0.2
504,587 + DVU0445 0.24 +0.0
504,595 - DVU0445 0.25 +0.3
504,648 - DVU0445 0.28 +0.0
504,648 - DVU0445 0.28 -0.0
504,661 - DVU0445 0.29 +0.0
504,663 + DVU0445 0.29 -0.6
504,663 + DVU0445 0.29 +1.3
504,671 - DVU0445 0.29 -0.8
504,671 - DVU0445 0.29 -1.2
504,671 - DVU0445 0.29 -0.2
504,671 - DVU0445 0.29 +0.3
504,697 + DVU0445 0.31 -0.7
504,705 - DVU0445 0.31 +0.3
504,800 + DVU0445 0.37 +0.4
504,832 - DVU0445 0.38 +0.2
504,848 + DVU0445 0.39 +0.3
504,875 - DVU0445 0.41 +0.1
504,904 - DVU0445 0.43 -0.8
504,924 - DVU0445 0.44 +1.1
504,930 - DVU0445 0.44 +1.6
504,964 + DVU0445 0.46 +0.2
504,972 - DVU0445 0.47 -0.2
504,972 - DVU0445 0.47 -0.3
504,990 - DVU0445 0.48 -0.0
505,007 + DVU0445 0.49 +0.5
505,015 - DVU0445 0.49 -0.1
505,015 - DVU0445 0.49 +1.1
505,015 - DVU0445 0.49 +0.6
505,036 + DVU0445 0.50 -0.3
505,156 - DVU0445 0.57 +0.6
505,176 + DVU0445 0.58 -0.2
505,195 + DVU0445 0.59 +1.0
505,230 + DVU0445 0.62 -0.1
505,240 + DVU0445 0.62 -0.2
505,267 + DVU0445 0.64 -0.1
505,334 - DVU0445 0.68 +0.2
505,363 + DVU0445 0.69 -0.4
505,371 - DVU0445 0.70 -0.0
505,492 + DVU0445 0.77 +0.6
505,519 + DVU0445 0.78 +0.3
505,527 - DVU0445 0.79 +0.2
505,565 - DVU0445 0.81 +0.4
505,585 - DVU0445 0.82 -0.4
505,615 + DVU0445 0.84 -0.6
505,627 + DVU0445 0.85 +0.4
505,724 - +0.2
505,754 - -0.1
505,777 + +0.3
505,846 - -0.1
505,897 + -0.2
505,995 - -0.4
506,039 + -0.0
506,109 - +0.1
506,207 + DVU0446 0.11 +2.2
506,207 + DVU0446 0.11 -0.0
506,215 - DVU0446 0.11 -0.8
506,216 + DVU0446 0.11 +0.1
506,276 + DVU0446 0.15 -0.2
506,284 - DVU0446 0.16 +0.4
506,284 - DVU0446 0.16 -0.6
506,284 - DVU0446 0.16 +0.3
506,338 + DVU0446 0.19 +0.1
506,346 - DVU0446 0.20 -0.1
506,406 + DVU0446 0.24 +0.2
506,475 + DVU0446 0.28 -0.5
506,475 - DVU0446 0.28 -0.2
506,490 + DVU0446 0.29 +0.1
506,543 + DVU0446 0.32 -0.9
506,551 - DVU0446 0.33 -0.7
506,558 - DVU0446 0.33 -0.5
506,693 + DVU0446 0.42 +0.6
506,736 - DVU0446 0.45 -0.3
506,796 + DVU0446 0.49 -0.1
506,804 - DVU0446 0.49 -0.2
506,804 - DVU0446 0.49 +0.8
506,804 - DVU0446 0.49 -0.3
506,848 - DVU0446 0.52 -0.2
506,887 - DVU0446 0.55 +0.2

Or see this region's nucleotide sequence