Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ntrC and DVU0119 overlap by 4 nucleotides DVU0119 and DVU0120 overlap by 4 nucleotides DVU0120 and DVU0121 are separated by 49 nucleotides
DVU0118: ntrC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 152,047 to 153,411
ntrC
DVU0119: DVU0119 - sensor histidine kinase (TIGR), at 153,408 to 155,072
DVU0119
DVU0120: DVU0120 - ABC transporter, substrate-binding protein, putative (TIGR), at 155,069 to 156,007
DVU0120
DVU0121: DVU0121 - conserved hypothetical protein (TIGR), at 156,057 to 156,500
DVU0121
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.558 kb on + strand, within ntrC at 152.600 kb on - strand, within ntrC at 152.640 kb on - strand, within ntrC at 152.651 kb on + strand, within ntrC at 152.666 kb on - strand, within ntrC at 152.679 kb on - strand, within ntrC at 152.709 kb on - strand, within ntrC at 152.723 kb on + strand, within ntrC at 152.731 kb on - strand, within ntrC at 152.731 kb on - strand, within ntrC at 152.766 kb on - strand, within ntrC at 152.790 kb on - strand, within ntrC at 152.876 kb on + strand, within ntrC at 152.971 kb on - strand, within ntrC at 153.098 kb on + strand, within ntrC at 153.106 kb on - strand, within ntrC at 153.120 kb on - strand, within ntrC at 153.128 kb on + strand, within ntrC at 153.175 kb on - strand, within ntrC at 153.219 kb on + strand, within ntrC at 153.227 kb on - strand, within ntrC at 153.238 kb on + strand, within ntrC at 153.323 kb on + strand at 153.325 kb on + strand at 153.325 kb on + strand at 153.325 kb on + strand at 153.390 kb on + strand at 153.436 kb on - strand at 153.465 kb on + strand at 153.465 kb on + strand at 153.473 kb on - strand at 153.473 kb on - strand at 153.507 kb on + strand at 153.515 kb on - strand at 153.560 kb on - strand at 153.716 kb on + strand, within DVU0119 at 153.717 kb on + strand, within DVU0119 at 153.718 kb on - strand, within DVU0119 at 153.722 kb on + strand, within DVU0119 at 153.724 kb on - strand, within DVU0119 at 153.725 kb on - strand, within DVU0119 at 153.901 kb on + strand, within DVU0119 at 153.901 kb on + strand, within DVU0119 at 153.911 kb on + strand, within DVU0119 at 153.924 kb on - strand, within DVU0119 at 153.976 kb on + strand, within DVU0119 at 153.984 kb on - strand, within DVU0119 at 154.014 kb on + strand, within DVU0119 at 154.019 kb on + strand, within DVU0119 at 154.034 kb on - strand, within DVU0119 at 154.083 kb on + strand, within DVU0119 at 154.083 kb on + strand, within DVU0119 at 154.083 kb on + strand, within DVU0119 at 154.091 kb on - strand, within DVU0119 at 154.091 kb on - strand, within DVU0119 at 154.091 kb on - strand, within DVU0119 at 154.240 kb on + strand, within DVU0119 at 154.280 kb on + strand, within DVU0119 at 154.284 kb on - strand, within DVU0119 at 154.318 kb on + strand, within DVU0119 at 154.343 kb on + strand, within DVU0119 at 154.361 kb on - strand, within DVU0119 at 154.386 kb on + strand, within DVU0119 at 154.434 kb on - strand, within DVU0119 at 154.473 kb on + strand, within DVU0119 at 154.525 kb on - strand, within DVU0119 at 154.530 kb on - strand, within DVU0119 at 154.538 kb on - strand, within DVU0119 at 154.538 kb on - strand, within DVU0119 at 154.543 kb on - strand, within DVU0119 at 154.543 kb on - strand, within DVU0119 at 154.571 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.659 kb on - strand, within DVU0119 at 154.663 kb on + strand, within DVU0119 at 154.666 kb on - strand, within DVU0119 at 154.671 kb on - strand, within DVU0119 at 154.676 kb on - strand, within DVU0119 at 154.858 kb on - strand, within DVU0119 at 154.859 kb on + strand, within DVU0119 at 154.884 kb on - strand, within DVU0119 at 154.918 kb on + strand at 154.936 kb on + strand at 154.954 kb on + strand at 154.962 kb on - strand at 155.047 kb on + strand at 155.055 kb on - strand at 155.101 kb on + strand at 155.121 kb on - strand at 155.140 kb on - strand at 155.152 kb on - strand at 155.206 kb on + strand, within DVU0120 at 155.246 kb on - strand, within DVU0120 at 155.309 kb on - strand, within DVU0120 at 155.325 kb on + strand, within DVU0120 at 155.333 kb on - strand, within DVU0120 at 155.338 kb on + strand, within DVU0120 at 155.338 kb on + strand, within DVU0120 at 155.363 kb on - strand, within DVU0120 at 155.368 kb on - strand, within DVU0120 at 155.399 kb on - strand, within DVU0120 at 155.458 kb on - strand, within DVU0120 at 155.460 kb on - strand, within DVU0120 at 155.482 kb on + strand, within DVU0120 at 155.518 kb on - strand, within DVU0120 at 155.541 kb on + strand, within DVU0120 at 155.597 kb on + strand, within DVU0120 at 155.634 kb on + strand, within DVU0120 at 155.642 kb on - strand, within DVU0120 at 155.663 kb on - strand, within DVU0120 at 155.716 kb on + strand, within DVU0120 at 155.716 kb on + strand, within DVU0120 at 155.724 kb on - strand, within DVU0120 at 155.724 kb on - strand, within DVU0120 at 155.805 kb on + strand, within DVU0120 at 155.832 kb on + strand, within DVU0120 at 155.866 kb on - strand, within DVU0120 at 155.886 kb on + strand, within DVU0120 at 155.936 kb on + strand at 155.936 kb on + strand at 155.944 kb on - strand at 155.944 kb on - strand at 155.989 kb on + strand at 155.997 kb on - strand at 156.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 152,558 + ntrC DVU0118 0.37 +0.6 152,600 - ntrC DVU0118 0.41 -1.0 152,640 - ntrC DVU0118 0.43 -0.0 152,651 + ntrC DVU0118 0.44 -0.6 152,666 - ntrC DVU0118 0.45 -0.3 152,679 - ntrC DVU0118 0.46 -1.1 152,709 - ntrC DVU0118 0.48 +0.3 152,723 + ntrC DVU0118 0.50 -0.7 152,731 - ntrC DVU0118 0.50 -0.1 152,731 - ntrC DVU0118 0.50 -0.4 152,766 - ntrC DVU0118 0.53 -0.9 152,790 - ntrC DVU0118 0.54 +0.0 152,876 + ntrC DVU0118 0.61 -0.1 152,971 - ntrC DVU0118 0.68 -0.1 153,098 + ntrC DVU0118 0.77 -0.0 153,106 - ntrC DVU0118 0.78 -0.2 153,120 - ntrC DVU0118 0.79 +0.2 153,128 + ntrC DVU0118 0.79 -0.2 153,175 - ntrC DVU0118 0.83 -0.6 153,219 + ntrC DVU0118 0.86 +0.1 153,227 - ntrC DVU0118 0.86 -0.2 153,238 + ntrC DVU0118 0.87 -1.9 153,323 + -0.5 153,325 + -0.2 153,325 + +0.1 153,325 + -0.6 153,390 + +0.6 153,436 - +0.1 153,465 + -1.0 153,465 + -1.6 153,473 - -0.3 153,473 - -0.5 153,507 + +0.0 153,515 - -1.2 153,560 - +0.5 153,716 + DVU0119 0.18 -0.1 153,717 + DVU0119 0.19 +0.7 153,718 - DVU0119 0.19 -0.3 153,722 + DVU0119 0.19 +0.1 153,724 - DVU0119 0.19 +0.1 153,725 - DVU0119 0.19 +0.0 153,901 + DVU0119 0.30 +0.0 153,901 + DVU0119 0.30 -0.9 153,911 + DVU0119 0.30 +0.4 153,924 - DVU0119 0.31 -0.6 153,976 + DVU0119 0.34 +0.6 153,984 - DVU0119 0.35 -0.4 154,014 + DVU0119 0.36 -1.6 154,019 + DVU0119 0.37 -0.1 154,034 - DVU0119 0.38 -0.5 154,083 + DVU0119 0.41 -0.3 154,083 + DVU0119 0.41 -0.3 154,083 + DVU0119 0.41 -0.2 154,091 - DVU0119 0.41 +0.2 154,091 - DVU0119 0.41 -1.4 154,091 - DVU0119 0.41 -1.7 154,240 + DVU0119 0.50 -0.7 154,280 + DVU0119 0.52 -0.0 154,284 - DVU0119 0.53 -0.3 154,318 + DVU0119 0.55 +0.3 154,343 + DVU0119 0.56 -0.5 154,361 - DVU0119 0.57 -0.4 154,386 + DVU0119 0.59 -1.2 154,434 - DVU0119 0.62 -0.4 154,473 + DVU0119 0.64 -1.1 154,525 - DVU0119 0.67 +1.8 154,530 - DVU0119 0.67 -0.6 154,538 - DVU0119 0.68 -1.3 154,538 - DVU0119 0.68 -0.9 154,543 - DVU0119 0.68 -2.4 154,543 - DVU0119 0.68 +0.1 154,571 - DVU0119 0.70 +0.1 154,649 - DVU0119 0.75 -0.2 154,649 - DVU0119 0.75 -0.7 154,649 - DVU0119 0.75 +0.5 154,649 - DVU0119 0.75 -1.1 154,649 - DVU0119 0.75 -0.8 154,659 - DVU0119 0.75 -1.4 154,663 + DVU0119 0.75 -0.3 154,666 - DVU0119 0.76 -0.3 154,671 - DVU0119 0.76 +0.1 154,676 - DVU0119 0.76 +0.1 154,858 - DVU0119 0.87 +0.0 154,859 + DVU0119 0.87 -0.6 154,884 - DVU0119 0.89 -1.1 154,918 + -2.6 154,936 + +0.3 154,954 + -0.1 154,962 - -0.3 155,047 + +1.1 155,055 - -0.2 155,101 + +0.1 155,121 - +0.2 155,140 - +0.4 155,152 - -0.3 155,206 + DVU0120 0.15 +0.1 155,246 - DVU0120 0.19 -0.4 155,309 - DVU0120 0.26 +0.6 155,325 + DVU0120 0.27 +0.8 155,333 - DVU0120 0.28 -0.4 155,338 + DVU0120 0.29 -0.4 155,338 + DVU0120 0.29 +0.0 155,363 - DVU0120 0.31 -0.6 155,368 - DVU0120 0.32 +1.3 155,399 - DVU0120 0.35 -0.1 155,458 - DVU0120 0.41 -0.1 155,460 - DVU0120 0.42 +1.2 155,482 + DVU0120 0.44 -0.3 155,518 - DVU0120 0.48 +0.2 155,541 + DVU0120 0.50 +0.8 155,597 + DVU0120 0.56 -0.2 155,634 + DVU0120 0.60 -0.3 155,642 - DVU0120 0.61 -0.3 155,663 - DVU0120 0.63 +1.0 155,716 + DVU0120 0.69 -0.1 155,716 + DVU0120 0.69 +0.1 155,724 - DVU0120 0.70 -1.5 155,724 - DVU0120 0.70 +0.2 155,805 + DVU0120 0.78 -0.6 155,832 + DVU0120 0.81 +0.4 155,866 - DVU0120 0.85 -0.2 155,886 + DVU0120 0.87 -0.5 155,936 + -0.2 155,936 + -0.4 155,944 - +0.1 155,944 - +1.9 155,989 + -0.2 155,997 - +0.3 156,062 - +0.3
Or see this region's nucleotide sequence